Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1472

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1471 and GFF1472 are separated by 208 nucleotidesGFF1472 and GFF1473 are separated by 327 nucleotides GFF1471 - Arginine/agmatine antiporter, at 136,292 to 137,560 GFF1471 GFF1472 - Transcriptional regulator of catabolic arginine decarboxylase (adiA), at 137,769 to 138,500 GFF1472 GFF1473 - Arginine decarboxylase, catabolic (EC 4.1.1.19), at 138,828 to 141,098 GFF1473 Position (kb) 137 138 139Strain fitness (log2 ratio) -1 0 1 2at 136.828 kb on + strand, within GFF1471at 136.915 kb on - strand, within GFF1471at 137.096 kb on - strand, within GFF1471at 137.249 kb on - strand, within GFF1471at 137.258 kb on + strand, within GFF1471at 137.258 kb on + strand, within GFF1471at 137.299 kb on - strand, within GFF1471at 137.409 kb on + strand, within GFF1471at 137.409 kb on + strand, within GFF1471at 137.410 kb on - strand, within GFF1471at 137.410 kb on - strand, within GFF1471at 137.410 kb on - strand, within GFF1471at 137.432 kb on + strand, within GFF1471at 137.669 kb on + strandat 137.676 kb on + strandat 137.676 kb on + strandat 137.706 kb on - strandat 137.736 kb on + strandat 137.736 kb on + strandat 137.804 kb on - strandat 137.822 kb on - strandat 137.866 kb on + strand, within GFF1472at 138.342 kb on - strand, within GFF1472at 138.428 kb on + strandat 138.459 kb on - strandat 138.465 kb on + strandat 138.501 kb on + strandat 138.555 kb on + strandat 138.784 kb on - strandat 138.795 kb on - strandat 138.845 kb on + strandat 138.845 kb on + strandat 138.846 kb on - strandat 138.933 kb on + strandat 138.934 kb on - strandat 138.938 kb on - strandat 138.938 kb on - strandat 139.014 kb on - strandat 139.090 kb on + strand, within GFF1473at 139.205 kb on + strand, within GFF1473at 139.282 kb on + strand, within GFF1473at 139.282 kb on + strand, within GFF1473at 139.361 kb on + strand, within GFF1473at 139.362 kb on - strand, within GFF1473

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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136,828 + GFF1471 0.42 -0.5
136,915 - GFF1471 0.49 +0.0
137,096 - GFF1471 0.63 -0.3
137,249 - GFF1471 0.75 +0.3
137,258 + GFF1471 0.76 -0.0
137,258 + GFF1471 0.76 -0.2
137,299 - GFF1471 0.79 +0.3
137,409 + GFF1471 0.88 +0.3
137,409 + GFF1471 0.88 +0.3
137,410 - GFF1471 0.88 +1.7
137,410 - GFF1471 0.88 -0.2
137,410 - GFF1471 0.88 -0.1
137,432 + GFF1471 0.90 +0.3
137,669 + -0.1
137,676 + -0.8
137,676 + +0.9
137,706 - -0.9
137,736 + -0.7
137,736 + -0.2
137,804 - +0.1
137,822 - +1.9
137,866 + GFF1472 0.13 -1.4
138,342 - GFF1472 0.78 +0.0
138,428 + -0.4
138,459 - +0.2
138,465 + -0.8
138,501 + +0.8
138,555 + +0.2
138,784 - +0.0
138,795 - +0.2
138,845 + +0.1
138,845 + -0.8
138,846 - +0.0
138,933 + +0.1
138,934 - -0.5
138,938 - +0.4
138,938 - -0.1
139,014 - -0.6
139,090 + GFF1473 0.12 -0.1
139,205 + GFF1473 0.17 -0.2
139,282 + GFF1473 0.20 -0.2
139,282 + GFF1473 0.20 +0.2
139,361 + GFF1473 0.23 +0.2
139,362 - GFF1473 0.24 +0.4

Or see this region's nucleotide sequence