Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1348

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1348 and GFF1349 overlap by 10 nucleotidesGFF1349 and GFF1350 are separated by 156 nucleotides GFF1348 - FIG01046723: hypothetical protein, at 154 to 384 GFF1348 GFF1349 - Putative acetyltransferase, at 375 to 812 GFF1349 GFF1350 - Homoserine O-succinyltransferase (EC 2.3.1.46), at 969 to 1,898 GFF1350 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2at 0.090 kb on - strandat 0.270 kb on + strand, within GFF1348at 0.838 kb on - strandat 0.948 kb on - strandat 0.968 kb on + strandat 1.082 kb on - strand, within GFF1350at 1.086 kb on - strand, within GFF1350at 1.086 kb on - strand, within GFF1350at 1.234 kb on - strand, within GFF1350at 1.374 kb on - strand, within GFF1350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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90 - -0.1
270 + GFF1348 0.50 -1.2
838 - +1.2
948 - +1.9
968 + +0.1
1,082 - GFF1350 0.12 -0.1
1,086 - GFF1350 0.13 +0.4
1,086 - GFF1350 0.13 -0.2
1,234 - GFF1350 0.28 +0.3
1,374 - GFF1350 0.44 +0.9

Or see this region's nucleotide sequence