Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4214.1 and Xcc-8004.4215.1 overlap by 4 nucleotides Xcc-8004.4215.1 and Xcc-8004.4216.1 overlap by 4 nucleotides Xcc-8004.4216.1 and Xcc-8004.4217.1 overlap by 8 nucleotides
Xcc-8004.4214.1: Xcc-8004.4214.1 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 4,042,463 to 4,043,038
Xcc-8004.4214.1
Xcc-8004.4215.1: Xcc-8004.4215.1 - DNA polymerase I 5'-3' exonuclease domain, at 4,043,035 to 4,044,033
Xcc-8004.4215.1
Xcc-8004.4216.1: Xcc-8004.4216.1 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 4,044,030 to 4,044,581
Xcc-8004.4216.1
Xcc-8004.4217.1: Xcc-8004.4217.1 - FIG01209968: hypothetical protein, at 4,044,574 to 4,045,359
Xcc-8004.4217.1
Position (kb) 4044
4045 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.110 kb on + strand at 4043.111 kb on - strand at 4043.111 kb on - strand at 4043.111 kb on - strand at 4043.111 kb on - strand at 4043.111 kb on - strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.131 kb on + strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.132 kb on - strand at 4043.308 kb on + strand, within Xcc-8004.4215.1 at 4043.309 kb on - strand, within Xcc-8004.4215.1 at 4043.309 kb on - strand, within Xcc-8004.4215.1 at 4043.309 kb on - strand, within Xcc-8004.4215.1 at 4043.309 kb on - strand, within Xcc-8004.4215.1 at 4043.309 kb on - strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.317 kb on + strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.318 kb on - strand, within Xcc-8004.4215.1 at 4043.422 kb on + strand, within Xcc-8004.4215.1 at 4043.422 kb on + strand, within Xcc-8004.4215.1 at 4043.423 kb on - strand, within Xcc-8004.4215.1 at 4043.423 kb on - strand, within Xcc-8004.4215.1 at 4043.548 kb on + strand, within Xcc-8004.4215.1 at 4043.548 kb on + strand, within Xcc-8004.4215.1 at 4043.549 kb on - strand, within Xcc-8004.4215.1 at 4043.624 kb on - strand, within Xcc-8004.4215.1 at 4043.624 kb on - strand, within Xcc-8004.4215.1 at 4044.063 kb on + strand at 4044.063 kb on + strand at 4044.063 kb on + strand at 4044.063 kb on + strand at 4044.064 kb on - strand at 4044.064 kb on - strand at 4044.064 kb on - strand at 4044.075 kb on + strand at 4044.075 kb on + strand at 4044.075 kb on + strand at 4044.075 kb on + strand at 4044.075 kb on + strand at 4044.076 kb on - strand at 4044.076 kb on - strand at 4044.076 kb on - strand at 4044.108 kb on + strand, within Xcc-8004.4216.1 at 4044.108 kb on + strand, within Xcc-8004.4216.1 at 4044.109 kb on - strand, within Xcc-8004.4216.1 at 4044.109 kb on - strand, within Xcc-8004.4216.1 at 4044.109 kb on - strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.121 kb on + strand, within Xcc-8004.4216.1 at 4044.122 kb on - strand, within Xcc-8004.4216.1 at 4044.122 kb on - strand, within Xcc-8004.4216.1 at 4044.122 kb on - strand, within Xcc-8004.4216.1 at 4044.507 kb on + strand, within Xcc-8004.4216.1 at 4044.540 kb on + strand at 4044.541 kb on - strand at 4044.741 kb on + strand, within Xcc-8004.4217.1 at 4044.742 kb on - strand, within Xcc-8004.4217.1 at 4044.742 kb on - strand, within Xcc-8004.4217.1 at 4044.820 kb on + strand, within Xcc-8004.4217.1 at 4044.820 kb on + strand, within Xcc-8004.4217.1 at 4044.820 kb on + strand, within Xcc-8004.4217.1 at 4044.820 kb on + strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.821 kb on - strand, within Xcc-8004.4217.1 at 4044.942 kb on + strand, within Xcc-8004.4217.1 at 4044.942 kb on + strand, within Xcc-8004.4217.1 at 4044.942 kb on + strand, within Xcc-8004.4217.1 at 4044.942 kb on + strand, within Xcc-8004.4217.1 at 4044.942 kb on + strand, within Xcc-8004.4217.1 at 4044.943 kb on - strand, within Xcc-8004.4217.1 at 4044.943 kb on - strand, within Xcc-8004.4217.1 at 4044.965 kb on - strand, within Xcc-8004.4217.1 at 4045.093 kb on + strand, within Xcc-8004.4217.1 at 4045.093 kb on + strand, within Xcc-8004.4217.1 at 4045.093 kb on + strand, within Xcc-8004.4217.1 at 4045.093 kb on + strand, within Xcc-8004.4217.1 at 4045.094 kb on - strand, within Xcc-8004.4217.1 at 4045.094 kb on - strand, within Xcc-8004.4217.1 at 4045.094 kb on - strand, within Xcc-8004.4217.1 at 4045.094 kb on - strand, within Xcc-8004.4217.1 at 4045.094 kb on - strand, within Xcc-8004.4217.1 at 4045.094 kb on - strand, within Xcc-8004.4217.1 at 4045.177 kb on + strand, within Xcc-8004.4217.1 at 4045.177 kb on + strand, within Xcc-8004.4217.1 at 4045.177 kb on + strand, within Xcc-8004.4217.1 at 4045.177 kb on + strand, within Xcc-8004.4217.1 at 4045.178 kb on - strand, within Xcc-8004.4217.1 at 4045.178 kb on - strand, within Xcc-8004.4217.1 at 4045.178 kb on - strand, within Xcc-8004.4217.1 at 4045.178 kb on - strand, within Xcc-8004.4217.1 at 4045.201 kb on + strand, within Xcc-8004.4217.1 at 4045.201 kb on + strand, within Xcc-8004.4217.1 at 4045.202 kb on - strand, within Xcc-8004.4217.1 at 4045.216 kb on + strand, within Xcc-8004.4217.1 at 4045.357 kb on + strand at 4045.407 kb on - strand at 4045.422 kb on - strand at 4045.422 kb on - strand at 4045.422 kb on - strand at 4045.422 kb on - strand at 4045.422 kb on - strand at 4045.422 kb on - strand at 4045.422 kb on - strand at 4045.426 kb on - strand at 4045.426 kb on - strand at 4045.426 kb on - strand at 4045.447 kb on - strand at 4045.478 kb on + strand at 4045.478 kb on + strand at 4045.515 kb on - strand at 4045.515 kb on - strand at 4045.515 kb on - strand at 4045.515 kb on - strand at 4045.515 kb on - strand at 4045.536 kb on - strand at 4045.536 kb on - strand at 4045.536 kb on - strand at 4045.540 kb on - strand at 4045.540 kb on - strand at 4045.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 4,043,110 + +0.1 4,043,110 + +1.3 4,043,110 + -0.1 4,043,110 + -0.3 4,043,110 + -0.4 4,043,110 + -0.7 4,043,110 + -0.4 4,043,110 + +0.3 4,043,110 + -1.2 4,043,110 + +0.7 4,043,111 - -0.1 4,043,111 - -0.4 4,043,111 - +0.1 4,043,111 - +1.7 4,043,111 - -0.0 4,043,131 + +0.1 4,043,131 + -0.4 4,043,131 + +0.2 4,043,131 + -0.1 4,043,131 + -0.4 4,043,131 + +0.4 4,043,131 + +0.9 4,043,131 + +0.9 4,043,131 + +0.9 4,043,131 + +1.4 4,043,132 - +0.7 4,043,132 - -0.4 4,043,132 - +0.6 4,043,132 - -0.3 4,043,132 - -1.0 4,043,132 - -0.3 4,043,132 - -0.2 4,043,132 - -0.8 4,043,132 - -1.1 4,043,308 + Xcc-8004.4215.1 0.27 -0.5 4,043,309 - Xcc-8004.4215.1 0.27 +0.1 4,043,309 - Xcc-8004.4215.1 0.27 -0.2 4,043,309 - Xcc-8004.4215.1 0.27 -0.7 4,043,309 - Xcc-8004.4215.1 0.27 -1.1 4,043,309 - Xcc-8004.4215.1 0.27 +0.6 4,043,317 + Xcc-8004.4215.1 0.28 +0.1 4,043,317 + Xcc-8004.4215.1 0.28 +0.8 4,043,317 + Xcc-8004.4215.1 0.28 -0.1 4,043,317 + Xcc-8004.4215.1 0.28 +0.3 4,043,317 + Xcc-8004.4215.1 0.28 -0.5 4,043,317 + Xcc-8004.4215.1 0.28 -0.3 4,043,317 + Xcc-8004.4215.1 0.28 +0.5 4,043,317 + Xcc-8004.4215.1 0.28 -0.8 4,043,317 + Xcc-8004.4215.1 0.28 +0.3 4,043,317 + Xcc-8004.4215.1 0.28 -0.4 4,043,317 + Xcc-8004.4215.1 0.28 +1.3 4,043,317 + Xcc-8004.4215.1 0.28 -0.7 4,043,317 + Xcc-8004.4215.1 0.28 +1.7 4,043,317 + Xcc-8004.4215.1 0.28 -0.2 4,043,317 + Xcc-8004.4215.1 0.28 -0.6 4,043,317 + Xcc-8004.4215.1 0.28 +0.2 4,043,317 + Xcc-8004.4215.1 0.28 +0.3 4,043,317 + Xcc-8004.4215.1 0.28 -0.0 4,043,317 + Xcc-8004.4215.1 0.28 +1.2 4,043,317 + Xcc-8004.4215.1 0.28 -0.9 4,043,317 + Xcc-8004.4215.1 0.28 +0.2 4,043,317 + Xcc-8004.4215.1 0.28 -0.1 4,043,318 - Xcc-8004.4215.1 0.28 -0.5 4,043,318 - Xcc-8004.4215.1 0.28 +0.0 4,043,318 - Xcc-8004.4215.1 0.28 -0.1 4,043,318 - Xcc-8004.4215.1 0.28 -0.6 4,043,318 - Xcc-8004.4215.1 0.28 -0.5 4,043,318 - Xcc-8004.4215.1 0.28 +0.0 4,043,318 - Xcc-8004.4215.1 0.28 -1.1 4,043,318 - Xcc-8004.4215.1 0.28 +0.7 4,043,318 - Xcc-8004.4215.1 0.28 -0.1 4,043,318 - Xcc-8004.4215.1 0.28 +0.3 4,043,318 - Xcc-8004.4215.1 0.28 +0.7 4,043,318 - Xcc-8004.4215.1 0.28 +0.3 4,043,318 - Xcc-8004.4215.1 0.28 -0.7 4,043,422 + Xcc-8004.4215.1 0.39 +0.8 4,043,422 + Xcc-8004.4215.1 0.39 -0.2 4,043,423 - Xcc-8004.4215.1 0.39 +0.1 4,043,423 - Xcc-8004.4215.1 0.39 +0.7 4,043,548 + Xcc-8004.4215.1 0.51 +0.0 4,043,548 + Xcc-8004.4215.1 0.51 -0.9 4,043,549 - Xcc-8004.4215.1 0.51 -0.5 4,043,624 - Xcc-8004.4215.1 0.59 -0.1 4,043,624 - Xcc-8004.4215.1 0.59 -1.9 4,044,063 + -0.2 4,044,063 + +0.4 4,044,063 + +0.8 4,044,063 + +0.7 4,044,064 - -1.7 4,044,064 - +0.7 4,044,064 - -0.4 4,044,075 + -0.3 4,044,075 + +0.3 4,044,075 + +0.3 4,044,075 + +0.4 4,044,075 + -0.6 4,044,076 - +0.9 4,044,076 - +0.0 4,044,076 - +0.2 4,044,108 + Xcc-8004.4216.1 0.14 +1.5 4,044,108 + Xcc-8004.4216.1 0.14 +0.5 4,044,109 - Xcc-8004.4216.1 0.14 -0.4 4,044,109 - Xcc-8004.4216.1 0.14 -0.4 4,044,109 - Xcc-8004.4216.1 0.14 +0.1 4,044,121 + Xcc-8004.4216.1 0.16 +0.3 4,044,121 + Xcc-8004.4216.1 0.16 -0.6 4,044,121 + Xcc-8004.4216.1 0.16 +0.2 4,044,121 + Xcc-8004.4216.1 0.16 -0.2 4,044,121 + Xcc-8004.4216.1 0.16 -1.3 4,044,121 + Xcc-8004.4216.1 0.16 -0.4 4,044,121 + Xcc-8004.4216.1 0.16 +0.3 4,044,121 + Xcc-8004.4216.1 0.16 -0.4 4,044,122 - Xcc-8004.4216.1 0.17 +0.5 4,044,122 - Xcc-8004.4216.1 0.17 +0.8 4,044,122 - Xcc-8004.4216.1 0.17 -1.2 4,044,507 + Xcc-8004.4216.1 0.86 -0.3 4,044,540 + +0.9 4,044,541 - -2.2 4,044,741 + Xcc-8004.4217.1 0.21 -0.7 4,044,742 - Xcc-8004.4217.1 0.21 +0.5 4,044,742 - Xcc-8004.4217.1 0.21 +2.3 4,044,820 + Xcc-8004.4217.1 0.31 +0.0 4,044,820 + Xcc-8004.4217.1 0.31 +0.3 4,044,820 + Xcc-8004.4217.1 0.31 +1.1 4,044,820 + Xcc-8004.4217.1 0.31 -0.6 4,044,821 - Xcc-8004.4217.1 0.31 -0.0 4,044,821 - Xcc-8004.4217.1 0.31 -1.5 4,044,821 - Xcc-8004.4217.1 0.31 +0.4 4,044,821 - Xcc-8004.4217.1 0.31 -0.8 4,044,821 - Xcc-8004.4217.1 0.31 +0.5 4,044,821 - Xcc-8004.4217.1 0.31 -0.4 4,044,821 - Xcc-8004.4217.1 0.31 +0.0 4,044,942 + Xcc-8004.4217.1 0.47 -1.4 4,044,942 + Xcc-8004.4217.1 0.47 -1.7 4,044,942 + Xcc-8004.4217.1 0.47 -0.5 4,044,942 + Xcc-8004.4217.1 0.47 +0.8 4,044,942 + Xcc-8004.4217.1 0.47 -0.1 4,044,943 - Xcc-8004.4217.1 0.47 -0.4 4,044,943 - Xcc-8004.4217.1 0.47 -0.4 4,044,965 - Xcc-8004.4217.1 0.50 +0.3 4,045,093 + Xcc-8004.4217.1 0.66 +2.3 4,045,093 + Xcc-8004.4217.1 0.66 -0.2 4,045,093 + Xcc-8004.4217.1 0.66 +0.7 4,045,093 + Xcc-8004.4217.1 0.66 +1.5 4,045,094 - Xcc-8004.4217.1 0.66 +0.1 4,045,094 - Xcc-8004.4217.1 0.66 +0.9 4,045,094 - Xcc-8004.4217.1 0.66 -0.2 4,045,094 - Xcc-8004.4217.1 0.66 +1.1 4,045,094 - Xcc-8004.4217.1 0.66 -0.5 4,045,094 - Xcc-8004.4217.1 0.66 +0.3 4,045,177 + Xcc-8004.4217.1 0.77 -0.0 4,045,177 + Xcc-8004.4217.1 0.77 +0.6 4,045,177 + Xcc-8004.4217.1 0.77 -1.5 4,045,177 + Xcc-8004.4217.1 0.77 +0.6 4,045,178 - Xcc-8004.4217.1 0.77 -0.5 4,045,178 - Xcc-8004.4217.1 0.77 +0.7 4,045,178 - Xcc-8004.4217.1 0.77 +1.4 4,045,178 - Xcc-8004.4217.1 0.77 +0.9 4,045,201 + Xcc-8004.4217.1 0.80 -1.1 4,045,201 + Xcc-8004.4217.1 0.80 +0.6 4,045,202 - Xcc-8004.4217.1 0.80 -0.6 4,045,216 + Xcc-8004.4217.1 0.82 +0.3 4,045,357 + +0.7 4,045,407 - +0.3 4,045,422 - -0.1 4,045,422 - +0.2 4,045,422 - -0.2 4,045,422 - +0.2 4,045,422 - +0.3 4,045,422 - -0.8 4,045,422 - -0.5 4,045,426 - +1.2 4,045,426 - -0.2 4,045,426 - -0.4 4,045,447 - +0.6 4,045,478 + -0.8 4,045,478 + +0.6 4,045,515 - +0.3 4,045,515 - -0.1 4,045,515 - +1.0 4,045,515 - +0.9 4,045,515 - +1.7 4,045,536 - -0.3 4,045,536 - +0.2 4,045,536 - +0.2 4,045,540 - -0.5 4,045,540 - -1.2 4,045,540 - +0.4
Or see this region's nucleotide sequence