Experiment: Xantho_MME_glucose_dropout_LTH
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3753.1 and Xcc-8004.3754.1 overlap by 8 nucleotides Xcc-8004.3754.1 and Xcc-8004.3755.1 overlap by 32 nucleotides Xcc-8004.3755.1 and Xcc-8004.3756.1 are separated by 70 nucleotides Xcc-8004.3756.1 and Xcc-8004.3757.1 are separated by 227 nucleotides
Xcc-8004.3753.1: Xcc-8004.3753.1 - putative secreted protein, at 3,625,251 to 3,626,855
Xcc-8004.3753.1
Xcc-8004.3754.1: Xcc-8004.3754.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 3,626,848 to 3,627,660
Xcc-8004.3754.1
Xcc-8004.3755.1: Xcc-8004.3755.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 3,627,629 to 3,627,952
Xcc-8004.3755.1
Xcc-8004.3756.1: Xcc-8004.3756.1 - Glyoxalase family protein, at 3,628,023 to 3,628,553
Xcc-8004.3756.1
Xcc-8004.3757.1: Xcc-8004.3757.1 - Mobile element protein, at 3,628,781 to 3,629,743
Xcc-8004.3757.1
Position (kb) 3627
3628 Strain fitness (log2 ratio) -2
-1
0
1 at 3626.709 kb on + strand at 3627.138 kb on - strand, within Xcc-8004.3754.1 at 3627.148 kb on - strand, within Xcc-8004.3754.1 at 3627.547 kb on - strand, within Xcc-8004.3754.1 at 3627.719 kb on + strand, within Xcc-8004.3755.1 at 3627.775 kb on + strand, within Xcc-8004.3755.1 at 3627.819 kb on - strand, within Xcc-8004.3755.1 at 3627.819 kb on - strand, within Xcc-8004.3755.1 at 3627.819 kb on - strand, within Xcc-8004.3755.1 at 3627.825 kb on + strand, within Xcc-8004.3755.1 at 3627.862 kb on + strand, within Xcc-8004.3755.1 at 3627.863 kb on - strand, within Xcc-8004.3755.1 at 3627.936 kb on + strand at 3627.937 kb on - strand at 3628.024 kb on + strand at 3628.025 kb on - strand at 3628.376 kb on + strand, within Xcc-8004.3756.1 at 3628.376 kb on + strand, within Xcc-8004.3756.1 at 3628.376 kb on + strand, within Xcc-8004.3756.1 at 3628.376 kb on + strand, within Xcc-8004.3756.1 at 3628.376 kb on + strand, within Xcc-8004.3756.1 at 3628.378 kb on + strand, within Xcc-8004.3756.1 at 3628.525 kb on + strand at 3628.554 kb on - strand at 3628.554 kb on - strand at 3628.679 kb on - strand at 3628.684 kb on + strand at 3628.685 kb on - strand at 3628.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH remove 3,626,709 + -0.1 3,627,138 - Xcc-8004.3754.1 0.36 +0.5 3,627,148 - Xcc-8004.3754.1 0.37 +0.2 3,627,547 - Xcc-8004.3754.1 0.86 -0.6 3,627,719 + Xcc-8004.3755.1 0.28 -0.7 3,627,775 + Xcc-8004.3755.1 0.45 -0.9 3,627,819 - Xcc-8004.3755.1 0.59 -2.3 3,627,819 - Xcc-8004.3755.1 0.59 -0.1 3,627,819 - Xcc-8004.3755.1 0.59 -2.3 3,627,825 + Xcc-8004.3755.1 0.60 -0.5 3,627,862 + Xcc-8004.3755.1 0.72 +0.7 3,627,863 - Xcc-8004.3755.1 0.72 +1.3 3,627,936 + -0.2 3,627,937 - +0.3 3,628,024 + -2.4 3,628,025 - +0.1 3,628,376 + Xcc-8004.3756.1 0.66 +0.0 3,628,376 + Xcc-8004.3756.1 0.66 -0.7 3,628,376 + Xcc-8004.3756.1 0.66 +0.8 3,628,376 + Xcc-8004.3756.1 0.66 -1.1 3,628,376 + Xcc-8004.3756.1 0.66 +0.3 3,628,378 + Xcc-8004.3756.1 0.67 -0.4 3,628,525 + +0.4 3,628,554 - +0.6 3,628,554 - -0.2 3,628,679 - +1.4 3,628,684 + +1.2 3,628,685 - +0.7 3,628,685 - +0.2
Or see this region's nucleotide sequence