Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1284.1

Experiment: Xantho_MME_glucose_dropout_LTH

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1282.1 and Xcc-8004.1283.1 are separated by 66 nucleotidesXcc-8004.1283.1 and Xcc-8004.1284.1 are separated by 24 nucleotidesXcc-8004.1284.1 and Xcc-8004.1285.1 are separated by 48 nucleotidesXcc-8004.1285.1 and Xcc-8004.1287.1 are separated by 200 nucleotides Xcc-8004.1282.1: Xcc-8004.1282.1 - sulfur deprivation response regulator, at 1,224,867 to 1,226,729 Xcc-8004.1282.1 Xcc-8004.1283.1: Xcc-8004.1283.1 - tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33), at 1,226,796 to 1,227,701 Xcc-8004.1283.1 Xcc-8004.1284.1: Xcc-8004.1284.1 - Thiazole biosynthesis protein ThiG, at 1,227,726 to 1,228,520 Xcc-8004.1284.1 Xcc-8004.1285.1: Xcc-8004.1285.1 - Sulfur carrier protein ThiS, at 1,228,569 to 1,228,724 Xcc-8004.1285.1 Xcc-8004.1287.1: Xcc-8004.1287.1 - Phospholipase/lecithinase/hemolysin, at 1,228,925 to 1,230,742 Xcc-8004.1287.1 Position (kb) 1227 1228 1229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1226.860 kb on + strandat 1226.860 kb on + strandat 1226.860 kb on + strandat 1226.860 kb on + strandat 1226.860 kb on + strandat 1226.861 kb on - strandat 1226.861 kb on - strandat 1227.013 kb on + strand, within Xcc-8004.1283.1at 1227.142 kb on + strand, within Xcc-8004.1283.1at 1227.143 kb on - strand, within Xcc-8004.1283.1at 1227.211 kb on + strand, within Xcc-8004.1283.1at 1227.211 kb on + strand, within Xcc-8004.1283.1at 1227.212 kb on - strand, within Xcc-8004.1283.1at 1227.295 kb on + strand, within Xcc-8004.1283.1at 1227.295 kb on + strand, within Xcc-8004.1283.1at 1227.295 kb on + strand, within Xcc-8004.1283.1at 1227.295 kb on + strand, within Xcc-8004.1283.1at 1227.296 kb on - strand, within Xcc-8004.1283.1at 1227.296 kb on - strand, within Xcc-8004.1283.1at 1227.296 kb on - strand, within Xcc-8004.1283.1at 1227.296 kb on - strand, within Xcc-8004.1283.1at 1227.296 kb on - strand, within Xcc-8004.1283.1at 1227.418 kb on + strand, within Xcc-8004.1283.1at 1227.418 kb on + strand, within Xcc-8004.1283.1at 1227.473 kb on + strand, within Xcc-8004.1283.1at 1227.637 kb on - strandat 1227.767 kb on - strandat 1227.995 kb on - strand, within Xcc-8004.1284.1at 1227.995 kb on - strand, within Xcc-8004.1284.1at 1227.995 kb on - strand, within Xcc-8004.1284.1at 1227.995 kb on - strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.102 kb on + strand, within Xcc-8004.1284.1at 1228.103 kb on - strand, within Xcc-8004.1284.1at 1228.103 kb on - strand, within Xcc-8004.1284.1at 1228.103 kb on - strand, within Xcc-8004.1284.1at 1228.103 kb on - strand, within Xcc-8004.1284.1at 1228.103 kb on - strand, within Xcc-8004.1284.1at 1228.103 kb on - strand, within Xcc-8004.1284.1at 1228.274 kb on - strand, within Xcc-8004.1284.1at 1228.287 kb on - strand, within Xcc-8004.1284.1at 1228.472 kb on - strandat 1228.876 kb on + strandat 1228.876 kb on + strandat 1228.877 kb on - strandat 1228.877 kb on - strandat 1228.877 kb on - strandat 1228.877 kb on - strandat 1228.880 kb on + strandat 1228.880 kb on + strandat 1228.880 kb on + strandat 1228.881 kb on - strandat 1228.881 kb on - strandat 1228.905 kb on + strandat 1228.906 kb on - strandat 1228.906 kb on - strandat 1229.054 kb on + strandat 1229.055 kb on - strandat 1229.055 kb on - strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.057 kb on + strandat 1229.058 kb on - strandat 1229.058 kb on - strandat 1229.135 kb on + strand, within Xcc-8004.1287.1at 1229.136 kb on - strand, within Xcc-8004.1287.1at 1229.136 kb on - strand, within Xcc-8004.1287.1at 1229.136 kb on - strand, within Xcc-8004.1287.1at 1229.198 kb on + strand, within Xcc-8004.1287.1at 1229.198 kb on + strand, within Xcc-8004.1287.1at 1229.198 kb on + strand, within Xcc-8004.1287.1at 1229.198 kb on + strand, within Xcc-8004.1287.1at 1229.198 kb on + strand, within Xcc-8004.1287.1at 1229.198 kb on + strand, within Xcc-8004.1287.1at 1229.199 kb on - strand, within Xcc-8004.1287.1at 1229.199 kb on - strand, within Xcc-8004.1287.1at 1229.199 kb on - strand, within Xcc-8004.1287.1at 1229.199 kb on - strand, within Xcc-8004.1287.1at 1229.278 kb on + strand, within Xcc-8004.1287.1at 1229.278 kb on + strand, within Xcc-8004.1287.1at 1229.278 kb on + strand, within Xcc-8004.1287.1at 1229.278 kb on + strand, within Xcc-8004.1287.1at 1229.278 kb on + strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.279 kb on - strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.282 kb on + strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.283 kb on - strand, within Xcc-8004.1287.1at 1229.324 kb on + strand, within Xcc-8004.1287.1at 1229.325 kb on - strand, within Xcc-8004.1287.1at 1229.325 kb on - strand, within Xcc-8004.1287.1at 1229.325 kb on - strand, within Xcc-8004.1287.1at 1229.456 kb on + strand, within Xcc-8004.1287.1at 1229.456 kb on + strand, within Xcc-8004.1287.1at 1229.456 kb on + strand, within Xcc-8004.1287.1at 1229.456 kb on + strand, within Xcc-8004.1287.1at 1229.457 kb on - strand, within Xcc-8004.1287.1at 1229.457 kb on - strand, within Xcc-8004.1287.1at 1229.457 kb on - strand, within Xcc-8004.1287.1at 1229.457 kb on - strand, within Xcc-8004.1287.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xantho_MME_glucose_dropout_LTH
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1,226,860 + +0.5
1,226,860 + +0.4
1,226,860 + -0.0
1,226,860 + -0.5
1,226,860 + -0.0
1,226,861 - -1.1
1,226,861 - -0.3
1,227,013 + Xcc-8004.1283.1 0.24 -0.5
1,227,142 + Xcc-8004.1283.1 0.38 +0.9
1,227,143 - Xcc-8004.1283.1 0.38 -0.4
1,227,211 + Xcc-8004.1283.1 0.46 -0.6
1,227,211 + Xcc-8004.1283.1 0.46 +0.6
1,227,212 - Xcc-8004.1283.1 0.46 +0.9
1,227,295 + Xcc-8004.1283.1 0.55 -0.6
1,227,295 + Xcc-8004.1283.1 0.55 -2.7
1,227,295 + Xcc-8004.1283.1 0.55 +0.5
1,227,295 + Xcc-8004.1283.1 0.55 -0.1
1,227,296 - Xcc-8004.1283.1 0.55 +0.5
1,227,296 - Xcc-8004.1283.1 0.55 -0.5
1,227,296 - Xcc-8004.1283.1 0.55 +0.7
1,227,296 - Xcc-8004.1283.1 0.55 -2.4
1,227,296 - Xcc-8004.1283.1 0.55 -0.0
1,227,418 + Xcc-8004.1283.1 0.69 -0.1
1,227,418 + Xcc-8004.1283.1 0.69 +1.4
1,227,473 + Xcc-8004.1283.1 0.75 -0.4
1,227,637 - -0.4
1,227,767 - -1.5
1,227,995 - Xcc-8004.1284.1 0.34 -0.5
1,227,995 - Xcc-8004.1284.1 0.34 +0.6
1,227,995 - Xcc-8004.1284.1 0.34 -0.3
1,227,995 - Xcc-8004.1284.1 0.34 -1.3
1,228,102 + Xcc-8004.1284.1 0.47 -1.7
1,228,102 + Xcc-8004.1284.1 0.47 -0.5
1,228,102 + Xcc-8004.1284.1 0.47 -2.1
1,228,102 + Xcc-8004.1284.1 0.47 -1.7
1,228,102 + Xcc-8004.1284.1 0.47 -0.8
1,228,102 + Xcc-8004.1284.1 0.47 -1.5
1,228,102 + Xcc-8004.1284.1 0.47 -2.3
1,228,102 + Xcc-8004.1284.1 0.47 -1.5
1,228,102 + Xcc-8004.1284.1 0.47 +0.0
1,228,102 + Xcc-8004.1284.1 0.47 -1.0
1,228,102 + Xcc-8004.1284.1 0.47 -3.1
1,228,102 + Xcc-8004.1284.1 0.47 -1.4
1,228,103 - Xcc-8004.1284.1 0.47 -2.2
1,228,103 - Xcc-8004.1284.1 0.47 -1.4
1,228,103 - Xcc-8004.1284.1 0.47 -1.3
1,228,103 - Xcc-8004.1284.1 0.47 -1.3
1,228,103 - Xcc-8004.1284.1 0.47 -1.3
1,228,103 - Xcc-8004.1284.1 0.47 -2.2
1,228,274 - Xcc-8004.1284.1 0.69 -0.1
1,228,287 - Xcc-8004.1284.1 0.71 -1.1
1,228,472 - -0.8
1,228,876 + +0.2
1,228,876 + +0.9
1,228,877 - +0.4
1,228,877 - -1.3
1,228,877 - -0.1
1,228,877 - +0.7
1,228,880 + +0.4
1,228,880 + -0.2
1,228,880 + -0.7
1,228,881 - -1.2
1,228,881 - -1.1
1,228,905 + -1.4
1,228,906 - +0.9
1,228,906 - -0.7
1,229,054 + -0.7
1,229,055 - +0.3
1,229,055 - +0.9
1,229,057 + -0.6
1,229,057 + +0.1
1,229,057 + +0.2
1,229,057 + +0.4
1,229,057 + +0.8
1,229,057 + -0.1
1,229,057 + +0.4
1,229,057 + +0.0
1,229,058 - +0.9
1,229,058 - -0.5
1,229,135 + Xcc-8004.1287.1 0.12 -0.1
1,229,136 - Xcc-8004.1287.1 0.12 -0.8
1,229,136 - Xcc-8004.1287.1 0.12 +0.4
1,229,136 - Xcc-8004.1287.1 0.12 -0.6
1,229,198 + Xcc-8004.1287.1 0.15 +0.1
1,229,198 + Xcc-8004.1287.1 0.15 -0.2
1,229,198 + Xcc-8004.1287.1 0.15 +0.1
1,229,198 + Xcc-8004.1287.1 0.15 -1.1
1,229,198 + Xcc-8004.1287.1 0.15 -0.3
1,229,198 + Xcc-8004.1287.1 0.15 -0.2
1,229,199 - Xcc-8004.1287.1 0.15 +0.2
1,229,199 - Xcc-8004.1287.1 0.15 -0.4
1,229,199 - Xcc-8004.1287.1 0.15 -0.1
1,229,199 - Xcc-8004.1287.1 0.15 +0.5
1,229,278 + Xcc-8004.1287.1 0.19 +0.4
1,229,278 + Xcc-8004.1287.1 0.19 +0.1
1,229,278 + Xcc-8004.1287.1 0.19 +1.0
1,229,278 + Xcc-8004.1287.1 0.19 +1.6
1,229,278 + Xcc-8004.1287.1 0.19 -1.1
1,229,279 - Xcc-8004.1287.1 0.19 +0.2
1,229,279 - Xcc-8004.1287.1 0.19 -0.6
1,229,279 - Xcc-8004.1287.1 0.19 -0.9
1,229,279 - Xcc-8004.1287.1 0.19 +0.2
1,229,279 - Xcc-8004.1287.1 0.19 -0.4
1,229,279 - Xcc-8004.1287.1 0.19 -0.9
1,229,279 - Xcc-8004.1287.1 0.19 -0.6
1,229,279 - Xcc-8004.1287.1 0.19 +0.1
1,229,279 - Xcc-8004.1287.1 0.19 -0.4
1,229,279 - Xcc-8004.1287.1 0.19 +0.0
1,229,282 + Xcc-8004.1287.1 0.20 +0.3
1,229,282 + Xcc-8004.1287.1 0.20 -0.3
1,229,282 + Xcc-8004.1287.1 0.20 -0.7
1,229,282 + Xcc-8004.1287.1 0.20 +1.0
1,229,282 + Xcc-8004.1287.1 0.20 +0.1
1,229,282 + Xcc-8004.1287.1 0.20 -0.0
1,229,282 + Xcc-8004.1287.1 0.20 -0.1
1,229,282 + Xcc-8004.1287.1 0.20 -1.2
1,229,282 + Xcc-8004.1287.1 0.20 -1.3
1,229,282 + Xcc-8004.1287.1 0.20 -0.9
1,229,282 + Xcc-8004.1287.1 0.20 -0.6
1,229,283 - Xcc-8004.1287.1 0.20 -0.1
1,229,283 - Xcc-8004.1287.1 0.20 +0.6
1,229,283 - Xcc-8004.1287.1 0.20 +0.2
1,229,283 - Xcc-8004.1287.1 0.20 +0.0
1,229,283 - Xcc-8004.1287.1 0.20 -0.1
1,229,283 - Xcc-8004.1287.1 0.20 +0.2
1,229,283 - Xcc-8004.1287.1 0.20 -0.9
1,229,283 - Xcc-8004.1287.1 0.20 +0.0
1,229,283 - Xcc-8004.1287.1 0.20 -0.3
1,229,283 - Xcc-8004.1287.1 0.20 +0.4
1,229,283 - Xcc-8004.1287.1 0.20 -0.4
1,229,324 + Xcc-8004.1287.1 0.22 -0.3
1,229,325 - Xcc-8004.1287.1 0.22 +1.9
1,229,325 - Xcc-8004.1287.1 0.22 -0.1
1,229,325 - Xcc-8004.1287.1 0.22 +0.2
1,229,456 + Xcc-8004.1287.1 0.29 +0.2
1,229,456 + Xcc-8004.1287.1 0.29 -0.2
1,229,456 + Xcc-8004.1287.1 0.29 -0.1
1,229,456 + Xcc-8004.1287.1 0.29 +1.3
1,229,457 - Xcc-8004.1287.1 0.29 +0.1
1,229,457 - Xcc-8004.1287.1 0.29 +1.3
1,229,457 - Xcc-8004.1287.1 0.29 -0.3
1,229,457 - Xcc-8004.1287.1 0.29 -0.4

Or see this region's nucleotide sequence