Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_842 and PfGW456L13_843 are separated by 2 nucleotides PfGW456L13_843 and PfGW456L13_844 are separated by 13 nucleotides PfGW456L13_844 and PfGW456L13_845 are separated by 4 nucleotides
PfGW456L13_842 - Tyrosine recombinase XerC, at 949,784 to 950,683
_842
PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411
_843
PfGW456L13_844 - Diaminopimelate epimerase (EC 5.1.1.7), at 951,425 to 952,255
_844
PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507
_845
Position (kb) 951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 950.436 kb on + strand, within PfGW456L13_842 at 950.442 kb on + strand, within PfGW456L13_842 at 950.442 kb on + strand, within PfGW456L13_842 at 950.443 kb on - strand, within PfGW456L13_842 at 950.443 kb on - strand, within PfGW456L13_842 at 950.465 kb on + strand, within PfGW456L13_842 at 950.661 kb on + strand at 950.662 kb on - strand at 950.692 kb on + strand at 950.750 kb on + strand at 950.750 kb on + strand at 950.750 kb on + strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.784 kb on - strand, within PfGW456L13_843 at 950.784 kb on - strand, within PfGW456L13_843 at 951.270 kb on + strand, within PfGW456L13_843 at 951.338 kb on - strand, within PfGW456L13_843 at 951.338 kb on - strand, within PfGW456L13_843 at 951.447 kb on + strand at 951.447 kb on + strand at 951.447 kb on + strand at 951.447 kb on + strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.448 kb on - strand at 951.449 kb on + strand at 951.449 kb on + strand at 951.449 kb on + strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.450 kb on - strand at 951.537 kb on - strand, within PfGW456L13_844 at 951.835 kb on - strand, within PfGW456L13_844 at 952.240 kb on + strand at 952.240 kb on + strand at 952.240 kb on + strand at 952.241 kb on - strand at 952.262 kb on - strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.288 kb on + strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.289 kb on - strand at 952.375 kb on + strand at 952.375 kb on + strand at 952.376 kb on - strand at 952.376 kb on - strand at 952.376 kb on - strand at 952.562 kb on - strand, within PfGW456L13_845 at 952.562 kb on - strand, within PfGW456L13_845 at 952.562 kb on - strand, within PfGW456L13_845 at 952.637 kb on - strand, within PfGW456L13_845 at 952.744 kb on + strand, within PfGW456L13_845 at 952.744 kb on + strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.745 kb on - strand, within PfGW456L13_845 at 952.819 kb on + strand, within PfGW456L13_845 at 952.819 kb on + strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.820 kb on - strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 953.026 kb on + strand, within PfGW456L13_845
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 950,436 + PfGW456L13_842 0.72 -0.1 950,442 + PfGW456L13_842 0.73 -0.1 950,442 + PfGW456L13_842 0.73 -0.6 950,443 - PfGW456L13_842 0.73 -1.9 950,443 - PfGW456L13_842 0.73 -0.4 950,465 + PfGW456L13_842 0.76 -0.8 950,661 + -0.4 950,662 - +0.6 950,692 + -1.9 950,750 + +0.4 950,750 + -1.1 950,750 + +1.0 950,751 - +0.4 950,751 - +0.2 950,751 - -1.4 950,751 - -0.9 950,751 - -0.1 950,751 - +0.7 950,751 - +0.2 950,751 - -1.2 950,784 - PfGW456L13_843 0.13 +0.5 950,784 - PfGW456L13_843 0.13 +0.6 951,270 + PfGW456L13_843 0.80 +0.2 951,338 - PfGW456L13_843 0.90 -0.4 951,338 - PfGW456L13_843 0.90 -2.1 951,447 + +1.1 951,447 + -1.3 951,447 + +0.1 951,447 + +0.5 951,448 - -0.3 951,448 - +0.3 951,448 - -0.4 951,448 - -3.1 951,449 + -0.7 951,449 + +0.6 951,449 + +0.0 951,450 - -0.6 951,450 - +0.0 951,450 - -1.7 951,450 - -2.2 951,450 - +0.9 951,450 - -0.1 951,450 - -0.2 951,450 - -0.5 951,450 - -1.6 951,450 - +0.5 951,450 - -1.8 951,450 - +0.4 951,450 - -0.9 951,450 - -0.1 951,450 - -0.8 951,450 - -0.1 951,537 - PfGW456L13_844 0.13 -0.8 951,835 - PfGW456L13_844 0.49 -0.6 952,240 + +0.6 952,240 + +0.5 952,240 + -0.6 952,241 - -1.3 952,262 - -0.8 952,288 + +0.0 952,288 + +1.0 952,288 + +0.3 952,288 + +0.5 952,288 + +2.3 952,289 - +0.5 952,289 - -1.2 952,289 - -0.7 952,289 - +0.2 952,289 - +0.0 952,289 - -1.1 952,289 - -1.1 952,289 - -1.2 952,289 - -1.2 952,289 - -0.8 952,289 - -1.5 952,289 - -1.2 952,375 + -1.5 952,375 + -0.5 952,376 - -1.7 952,376 - -1.4 952,376 - -1.7 952,562 - PfGW456L13_845 0.24 -1.2 952,562 - PfGW456L13_845 0.24 +0.5 952,562 - PfGW456L13_845 0.24 -1.3 952,637 - PfGW456L13_845 0.30 -1.9 952,744 + PfGW456L13_845 0.39 +0.0 952,744 + PfGW456L13_845 0.39 -0.5 952,745 - PfGW456L13_845 0.39 +0.2 952,745 - PfGW456L13_845 0.39 -1.5 952,745 - PfGW456L13_845 0.39 -0.8 952,745 - PfGW456L13_845 0.39 -1.7 952,819 + PfGW456L13_845 0.45 +0.0 952,819 + PfGW456L13_845 0.45 +0.2 952,820 - PfGW456L13_845 0.45 -1.6 952,820 - PfGW456L13_845 0.45 +0.5 952,820 - PfGW456L13_845 0.45 +1.0 952,820 - PfGW456L13_845 0.45 -1.9 952,820 - PfGW456L13_845 0.45 -1.7 952,820 - PfGW456L13_845 0.45 -1.2 952,963 + PfGW456L13_845 0.56 -0.6 952,963 + PfGW456L13_845 0.56 -0.1 952,963 + PfGW456L13_845 0.56 -0.1 952,963 + PfGW456L13_845 0.56 +0.3 952,964 - PfGW456L13_845 0.56 -0.1 952,964 - PfGW456L13_845 0.56 -1.0 952,964 - PfGW456L13_845 0.56 -0.5 952,964 - PfGW456L13_845 0.56 -0.9 952,964 - PfGW456L13_845 0.56 -2.2 952,964 - PfGW456L13_845 0.56 +0.5 952,964 - PfGW456L13_845 0.56 -0.7 952,964 - PfGW456L13_845 0.56 -1.8 953,026 + PfGW456L13_845 0.61 -1.1
Or see this region's nucleotide sequence