Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3722 and PfGW456L13_3723 are separated by 562 nucleotides PfGW456L13_3723 and PfGW456L13_3724 are separated by 359 nucleotides
PfGW456L13_3722 - hypothetical protein, at 4,186,466 to 4,186,693
_3722
PfGW456L13_3723 - hypothetical protein, at 4,187,256 to 4,188,287
_3723
PfGW456L13_3724 - Malate:quinone oxidoreductase (EC 1.1.5.4), at 4,188,647 to 4,190,293
_3724
Position (kb)
4187
4188
4189 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4186.467 kb on + strand at 4186.468 kb on - strand at 4186.478 kb on + strand at 4186.478 kb on + strand at 4186.479 kb on - strand at 4186.479 kb on - strand at 4186.479 kb on - strand at 4186.479 kb on - strand at 4186.479 kb on - strand at 4186.479 kb on - strand at 4186.479 kb on - strand at 4186.505 kb on + strand, within PfGW456L13_3722 at 4186.696 kb on + strand at 4186.697 kb on - strand at 4186.702 kb on + strand at 4186.702 kb on + strand at 4186.702 kb on + strand at 4186.703 kb on - strand at 4186.769 kb on + strand at 4186.769 kb on + strand at 4186.770 kb on - strand at 4186.770 kb on - strand at 4186.786 kb on + strand at 4186.786 kb on + strand at 4186.787 kb on - strand at 4186.839 kb on + strand at 4186.840 kb on - strand at 4186.840 kb on - strand at 4186.851 kb on + strand at 4186.852 kb on - strand at 4186.862 kb on + strand at 4186.862 kb on + strand at 4186.863 kb on - strand at 4186.946 kb on + strand at 4186.947 kb on - strand at 4186.953 kb on + strand at 4187.073 kb on - strand at 4187.104 kb on + strand at 4187.110 kb on + strand at 4187.255 kb on - strand at 4187.267 kb on - strand at 4187.270 kb on + strand at 4187.513 kb on + strand, within PfGW456L13_3723 at 4187.644 kb on + strand, within PfGW456L13_3723 at 4187.660 kb on - strand, within PfGW456L13_3723 at 4187.766 kb on - strand, within PfGW456L13_3723 at 4187.769 kb on + strand, within PfGW456L13_3723 at 4187.769 kb on + strand, within PfGW456L13_3723 at 4187.817 kb on + strand, within PfGW456L13_3723 at 4187.858 kb on - strand, within PfGW456L13_3723 at 4187.869 kb on + strand, within PfGW456L13_3723 at 4187.954 kb on + strand, within PfGW456L13_3723 at 4188.053 kb on + strand, within PfGW456L13_3723 at 4188.197 kb on + strand at 4188.305 kb on + strand at 4188.366 kb on - strand at 4188.369 kb on + strand at 4188.369 kb on + strand at 4188.524 kb on - strand at 4188.637 kb on + strand at 4188.637 kb on + strand at 4188.649 kb on - strand at 4188.771 kb on + strand at 4188.771 kb on + strand at 4188.771 kb on + strand at 4188.772 kb on - strand at 4188.772 kb on - strand at 4188.822 kb on + strand, within PfGW456L13_3724 at 4188.830 kb on + strand, within PfGW456L13_3724 at 4189.092 kb on + strand, within PfGW456L13_3724 at 4189.092 kb on + strand, within PfGW456L13_3724 at 4189.093 kb on - strand, within PfGW456L13_3724 at 4189.093 kb on - strand, within PfGW456L13_3724 at 4189.149 kb on + strand, within PfGW456L13_3724 at 4189.213 kb on + strand, within PfGW456L13_3724 at 4189.214 kb on - strand, within PfGW456L13_3724 at 4189.214 kb on - strand, within PfGW456L13_3724 at 4189.214 kb on - strand, within PfGW456L13_3724 at 4189.234 kb on - strand, within PfGW456L13_3724 at 4189.234 kb on - strand, within PfGW456L13_3724
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,186,467 + -1.0 4,186,468 - +1.0 4,186,478 + +0.8 4,186,478 + +0.2 4,186,479 - +0.6 4,186,479 - -0.7 4,186,479 - +0.7 4,186,479 - -1.0 4,186,479 - +0.6 4,186,479 - -0.0 4,186,479 - -0.6 4,186,505 + PfGW456L13_3722 0.17 +0.7 4,186,696 + +0.2 4,186,697 - -0.2 4,186,702 + -0.3 4,186,702 + +0.1 4,186,702 + -0.8 4,186,703 - +0.1 4,186,769 + -0.8 4,186,769 + +1.8 4,186,770 - -0.2 4,186,770 - +1.4 4,186,786 + +0.3 4,186,786 + +1.0 4,186,787 - -1.9 4,186,839 + +0.3 4,186,840 - -0.9 4,186,840 - -0.0 4,186,851 + -0.9 4,186,852 - +0.7 4,186,862 + -0.2 4,186,862 + +0.2 4,186,863 - -1.6 4,186,946 + +0.5 4,186,947 - +0.6 4,186,953 + +0.7 4,187,073 - +0.4 4,187,104 + -1.5 4,187,110 + +0.6 4,187,255 - +0.3 4,187,267 - +0.7 4,187,270 + +1.4 4,187,513 + PfGW456L13_3723 0.25 -1.5 4,187,644 + PfGW456L13_3723 0.38 +0.0 4,187,660 - PfGW456L13_3723 0.39 +0.1 4,187,766 - PfGW456L13_3723 0.49 -1.2 4,187,769 + PfGW456L13_3723 0.50 +0.4 4,187,769 + PfGW456L13_3723 0.50 -1.1 4,187,817 + PfGW456L13_3723 0.54 -1.8 4,187,858 - PfGW456L13_3723 0.58 -1.3 4,187,869 + PfGW456L13_3723 0.59 +0.1 4,187,954 + PfGW456L13_3723 0.68 -1.9 4,188,053 + PfGW456L13_3723 0.77 -1.6 4,188,197 + -0.6 4,188,305 + +0.2 4,188,366 - -1.5 4,188,369 + -1.4 4,188,369 + -0.3 4,188,524 - -1.5 4,188,637 + +0.1 4,188,637 + +0.8 4,188,649 - +0.6 4,188,771 + +0.4 4,188,771 + +0.8 4,188,771 + -1.4 4,188,772 - +0.2 4,188,772 - -0.6 4,188,822 + PfGW456L13_3724 0.11 +1.5 4,188,830 + PfGW456L13_3724 0.11 -0.1 4,189,092 + PfGW456L13_3724 0.27 +0.6 4,189,092 + PfGW456L13_3724 0.27 +1.1 4,189,093 - PfGW456L13_3724 0.27 -0.2 4,189,093 - PfGW456L13_3724 0.27 -1.6 4,189,149 + PfGW456L13_3724 0.30 +2.1 4,189,213 + PfGW456L13_3724 0.34 -2.4 4,189,214 - PfGW456L13_3724 0.34 -0.5 4,189,214 - PfGW456L13_3724 0.34 -0.3 4,189,214 - PfGW456L13_3724 0.34 +0.4 4,189,234 - PfGW456L13_3724 0.36 +0.3 4,189,234 - PfGW456L13_3724 0.36 +0.4
Or see this region's nucleotide sequence