Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3723

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3722 and PfGW456L13_3723 are separated by 562 nucleotidesPfGW456L13_3723 and PfGW456L13_3724 are separated by 359 nucleotides PfGW456L13_3722 - hypothetical protein, at 4,186,466 to 4,186,693 _3722 PfGW456L13_3723 - hypothetical protein, at 4,187,256 to 4,188,287 _3723 PfGW456L13_3724 - Malate:quinone oxidoreductase (EC 1.1.5.4), at 4,188,647 to 4,190,293 _3724 Position (kb) 4187 4188 4189Strain fitness (log2 ratio) -2 -1 0 1 2at 4186.467 kb on + strandat 4186.468 kb on - strandat 4186.478 kb on + strandat 4186.478 kb on + strandat 4186.479 kb on - strandat 4186.479 kb on - strandat 4186.479 kb on - strandat 4186.479 kb on - strandat 4186.479 kb on - strandat 4186.479 kb on - strandat 4186.479 kb on - strandat 4186.505 kb on + strand, within PfGW456L13_3722at 4186.696 kb on + strandat 4186.697 kb on - strandat 4186.702 kb on + strandat 4186.702 kb on + strandat 4186.702 kb on + strandat 4186.703 kb on - strandat 4186.769 kb on + strandat 4186.769 kb on + strandat 4186.770 kb on - strandat 4186.770 kb on - strandat 4186.786 kb on + strandat 4186.786 kb on + strandat 4186.787 kb on - strandat 4186.839 kb on + strandat 4186.840 kb on - strandat 4186.840 kb on - strandat 4186.851 kb on + strandat 4186.852 kb on - strandat 4186.862 kb on + strandat 4186.862 kb on + strandat 4186.863 kb on - strandat 4186.946 kb on + strandat 4186.947 kb on - strandat 4186.953 kb on + strandat 4187.073 kb on - strandat 4187.104 kb on + strandat 4187.110 kb on + strandat 4187.255 kb on - strandat 4187.267 kb on - strandat 4187.270 kb on + strandat 4187.513 kb on + strand, within PfGW456L13_3723at 4187.644 kb on + strand, within PfGW456L13_3723at 4187.660 kb on - strand, within PfGW456L13_3723at 4187.766 kb on - strand, within PfGW456L13_3723at 4187.769 kb on + strand, within PfGW456L13_3723at 4187.769 kb on + strand, within PfGW456L13_3723at 4187.817 kb on + strand, within PfGW456L13_3723at 4187.858 kb on - strand, within PfGW456L13_3723at 4187.869 kb on + strand, within PfGW456L13_3723at 4187.954 kb on + strand, within PfGW456L13_3723at 4188.053 kb on + strand, within PfGW456L13_3723at 4188.197 kb on + strandat 4188.305 kb on + strandat 4188.366 kb on - strandat 4188.369 kb on + strandat 4188.369 kb on + strandat 4188.524 kb on - strandat 4188.637 kb on + strandat 4188.637 kb on + strandat 4188.649 kb on - strandat 4188.771 kb on + strandat 4188.771 kb on + strandat 4188.771 kb on + strandat 4188.772 kb on - strandat 4188.772 kb on - strandat 4188.822 kb on + strand, within PfGW456L13_3724at 4188.830 kb on + strand, within PfGW456L13_3724at 4189.092 kb on + strand, within PfGW456L13_3724at 4189.092 kb on + strand, within PfGW456L13_3724at 4189.093 kb on - strand, within PfGW456L13_3724at 4189.093 kb on - strand, within PfGW456L13_3724at 4189.149 kb on + strand, within PfGW456L13_3724at 4189.213 kb on + strand, within PfGW456L13_3724at 4189.214 kb on - strand, within PfGW456L13_3724at 4189.214 kb on - strand, within PfGW456L13_3724at 4189.214 kb on - strand, within PfGW456L13_3724at 4189.234 kb on - strand, within PfGW456L13_3724at 4189.234 kb on - strand, within PfGW456L13_3724

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,186,467 + -1.0
4,186,468 - +1.0
4,186,478 + +0.8
4,186,478 + +0.2
4,186,479 - +0.6
4,186,479 - -0.7
4,186,479 - +0.7
4,186,479 - -1.0
4,186,479 - +0.6
4,186,479 - -0.0
4,186,479 - -0.6
4,186,505 + PfGW456L13_3722 0.17 +0.7
4,186,696 + +0.2
4,186,697 - -0.2
4,186,702 + -0.3
4,186,702 + +0.1
4,186,702 + -0.8
4,186,703 - +0.1
4,186,769 + -0.8
4,186,769 + +1.8
4,186,770 - -0.2
4,186,770 - +1.4
4,186,786 + +0.3
4,186,786 + +1.0
4,186,787 - -1.9
4,186,839 + +0.3
4,186,840 - -0.9
4,186,840 - -0.0
4,186,851 + -0.9
4,186,852 - +0.7
4,186,862 + -0.2
4,186,862 + +0.2
4,186,863 - -1.6
4,186,946 + +0.5
4,186,947 - +0.6
4,186,953 + +0.7
4,187,073 - +0.4
4,187,104 + -1.5
4,187,110 + +0.6
4,187,255 - +0.3
4,187,267 - +0.7
4,187,270 + +1.4
4,187,513 + PfGW456L13_3723 0.25 -1.5
4,187,644 + PfGW456L13_3723 0.38 +0.0
4,187,660 - PfGW456L13_3723 0.39 +0.1
4,187,766 - PfGW456L13_3723 0.49 -1.2
4,187,769 + PfGW456L13_3723 0.50 +0.4
4,187,769 + PfGW456L13_3723 0.50 -1.1
4,187,817 + PfGW456L13_3723 0.54 -1.8
4,187,858 - PfGW456L13_3723 0.58 -1.3
4,187,869 + PfGW456L13_3723 0.59 +0.1
4,187,954 + PfGW456L13_3723 0.68 -1.9
4,188,053 + PfGW456L13_3723 0.77 -1.6
4,188,197 + -0.6
4,188,305 + +0.2
4,188,366 - -1.5
4,188,369 + -1.4
4,188,369 + -0.3
4,188,524 - -1.5
4,188,637 + +0.1
4,188,637 + +0.8
4,188,649 - +0.6
4,188,771 + +0.4
4,188,771 + +0.8
4,188,771 + -1.4
4,188,772 - +0.2
4,188,772 - -0.6
4,188,822 + PfGW456L13_3724 0.11 +1.5
4,188,830 + PfGW456L13_3724 0.11 -0.1
4,189,092 + PfGW456L13_3724 0.27 +0.6
4,189,092 + PfGW456L13_3724 0.27 +1.1
4,189,093 - PfGW456L13_3724 0.27 -0.2
4,189,093 - PfGW456L13_3724 0.27 -1.6
4,189,149 + PfGW456L13_3724 0.30 +2.1
4,189,213 + PfGW456L13_3724 0.34 -2.4
4,189,214 - PfGW456L13_3724 0.34 -0.5
4,189,214 - PfGW456L13_3724 0.34 -0.3
4,189,214 - PfGW456L13_3724 0.34 +0.4
4,189,234 - PfGW456L13_3724 0.36 +0.3
4,189,234 - PfGW456L13_3724 0.36 +0.4

Or see this region's nucleotide sequence