Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2100 and PfGW456L13_2101 are separated by 105 nucleotides PfGW456L13_2101 and PfGW456L13_2102 are separated by 13 nucleotides PfGW456L13_2102 and PfGW456L13_2103 are separated by 34 nucleotides PfGW456L13_2103 and PfGW456L13_2104 are separated by 179 nucleotides
PfGW456L13_2100 - FIG146278: Maf/YceF/YhdE family protein, at 2,307,171 to 2,307,749
_2100
PfGW456L13_2101 - COG1399 protein, clustered with ribosomal protein L32p, at 2,307,855 to 2,308,382
_2101
PfGW456L13_2102 - LSU ribosomal protein L32p, at 2,308,396 to 2,308,578
_2102
PfGW456L13_2103 - Phosphate:acyl-ACP acyltransferase PlsX, at 2,308,613 to 2,309,593
_2103
PfGW456L13_2104 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 2,309,773 to 2,310,657
_2104
Position (kb)
2308
2309
2310 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2307.738 kb on + strand at 2307.738 kb on + strand at 2307.761 kb on + strand at 2307.779 kb on + strand at 2307.780 kb on - strand at 2308.576 kb on + strand at 2309.100 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.238 kb on - strand, within PfGW456L13_2103 at 2309.615 kb on + strand at 2309.615 kb on + strand at 2309.615 kb on + strand at 2309.615 kb on + strand at 2309.616 kb on - strand at 2309.616 kb on - strand at 2309.616 kb on - strand at 2309.616 kb on - strand at 2309.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,307,738 + +0.0 2,307,738 + +0.1 2,307,761 + +0.3 2,307,779 + -1.6 2,307,780 - -0.1 2,308,576 + +1.7 2,309,100 + PfGW456L13_2103 0.50 -0.9 2,309,207 + PfGW456L13_2103 0.61 -1.0 2,309,207 + PfGW456L13_2103 0.61 +0.1 2,309,207 + PfGW456L13_2103 0.61 -3.7 2,309,207 + PfGW456L13_2103 0.61 -0.6 2,309,208 - PfGW456L13_2103 0.61 -1.9 2,309,208 - PfGW456L13_2103 0.61 -1.8 2,309,208 - PfGW456L13_2103 0.61 -2.0 2,309,208 - PfGW456L13_2103 0.61 -1.0 2,309,208 - PfGW456L13_2103 0.61 -2.9 2,309,208 - PfGW456L13_2103 0.61 -0.6 2,309,238 - PfGW456L13_2103 0.64 -1.8 2,309,615 + +0.5 2,309,615 + -0.4 2,309,615 + +0.0 2,309,615 + +0.2 2,309,616 - +0.2 2,309,616 - -0.0 2,309,616 - -0.3 2,309,616 - -0.7 2,309,705 + -1.0
Or see this region's nucleotide sequence