Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2103

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2100 and PfGW456L13_2101 are separated by 105 nucleotidesPfGW456L13_2101 and PfGW456L13_2102 are separated by 13 nucleotidesPfGW456L13_2102 and PfGW456L13_2103 are separated by 34 nucleotidesPfGW456L13_2103 and PfGW456L13_2104 are separated by 179 nucleotides PfGW456L13_2100 - FIG146278: Maf/YceF/YhdE family protein, at 2,307,171 to 2,307,749 _2100 PfGW456L13_2101 - COG1399 protein, clustered with ribosomal protein L32p, at 2,307,855 to 2,308,382 _2101 PfGW456L13_2102 - LSU ribosomal protein L32p, at 2,308,396 to 2,308,578 _2102 PfGW456L13_2103 - Phosphate:acyl-ACP acyltransferase PlsX, at 2,308,613 to 2,309,593 _2103 PfGW456L13_2104 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 2,309,773 to 2,310,657 _2104 Position (kb) 2308 2309 2310Strain fitness (log2 ratio) -3 -2 -1 0 1at 2307.738 kb on + strandat 2307.738 kb on + strandat 2307.761 kb on + strandat 2307.779 kb on + strandat 2307.780 kb on - strandat 2308.576 kb on + strandat 2309.100 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.238 kb on - strand, within PfGW456L13_2103at 2309.615 kb on + strandat 2309.615 kb on + strandat 2309.615 kb on + strandat 2309.615 kb on + strandat 2309.616 kb on - strandat 2309.616 kb on - strandat 2309.616 kb on - strandat 2309.616 kb on - strandat 2309.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,307,738 + +0.0
2,307,738 + +0.1
2,307,761 + +0.3
2,307,779 + -1.6
2,307,780 - -0.1
2,308,576 + +1.7
2,309,100 + PfGW456L13_2103 0.50 -0.9
2,309,207 + PfGW456L13_2103 0.61 -1.0
2,309,207 + PfGW456L13_2103 0.61 +0.1
2,309,207 + PfGW456L13_2103 0.61 -3.7
2,309,207 + PfGW456L13_2103 0.61 -0.6
2,309,208 - PfGW456L13_2103 0.61 -1.9
2,309,208 - PfGW456L13_2103 0.61 -1.8
2,309,208 - PfGW456L13_2103 0.61 -2.0
2,309,208 - PfGW456L13_2103 0.61 -1.0
2,309,208 - PfGW456L13_2103 0.61 -2.9
2,309,208 - PfGW456L13_2103 0.61 -0.6
2,309,238 - PfGW456L13_2103 0.64 -1.8
2,309,615 + +0.5
2,309,615 + -0.4
2,309,615 + +0.0
2,309,615 + +0.2
2,309,616 - +0.2
2,309,616 - -0.0
2,309,616 - -0.3
2,309,616 - -0.7
2,309,705 + -1.0

Or see this region's nucleotide sequence