Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16720

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
3,789,096	-		PFLU_RS16715	0.85	-2.1
3,789,323	+				-1.1
3,789,348	-				-2.2
3,789,480	+				-0.7
3,789,480	+				-0.3
3,789,480	+				-2.3
3,789,481	-				-1.7
3,789,481	-				-0.7
3,789,481	-				-0.5
3,789,481	-				-2.0
3,789,482	+				-0.7
3,789,482	+				-2.2
3,789,482	+				-2.8
3,789,482	+				-1.6
3,789,482	+				-1.3
3,789,482	+				-0.1
3,789,482	+				-1.1
3,789,482	+				-2.6
3,789,483	-				+0.9
3,789,483	-				-0.5
3,789,483	-				-3.3
3,789,483	-				-1.7
3,789,483	-				-3.4
3,789,483	-				+0.0
3,789,569	+				-0.7
3,789,570	-				-0.7
3,789,570	-				-1.6
3,789,712	+				-1.1
3,789,712	+				-2.2
3,789,713	-				-1.1
3,789,713	-				-1.4
3,789,926	-				+0.1
3,789,949	+				-1.1
3,789,950	-				-1.9
3,789,950	-				-3.2
3,789,950	-				+0.9
3,789,950	-				-1.1
3,790,008	+				-0.1
3,790,009	-				-2.8
3,790,034	+				-0.1
3,790,035	-				-1.9
3,790,035	-				+0.3
3,790,035	-				-2.8
3,790,100	+				-0.7
3,790,100	+				-4.3
3,790,100	+				-0.1
3,790,101	-				-2.1
3,790,144	+				-1.6
3,790,144	+				-1.6
3,790,145	-				-2.1
3,790,145	-				-0.7
3,790,145	-				-2.5
3,790,145	-				-1.5
3,790,145	-				-3.3
3,790,259	+				+1.1
3,790,259	+				-1.1
3,790,259	+				-1.1
3,790,260	-				+1.7
3,790,379	+				-2.8
3,790,379	+				-2.1
3,790,380	-				-1.1
3,790,380	-				+0.5
3,790,380	-				-0.1
3,790,413	-				-2.3
3,790,413	-				-0.7
3,790,503	-		PFLU_RS16720	0.11	-3.7
3,790,541	+		PFLU_RS16720	0.12	-2.4
3,790,541	+		PFLU_RS16720	0.12	-0.1
3,790,541	+		PFLU_RS16720	0.12	-3.0
3,790,541	+		PFLU_RS16720	0.12	-3.3
3,790,542	-		PFLU_RS16720	0.12	+0.9
3,790,792	+		PFLU_RS16720	0.18	+0.3
3,790,985	-		PFLU_RS16720	0.23	-1.7
3,791,096	+		PFLU_RS16720	0.26	-1.8
3,791,096	+		PFLU_RS16720	0.26	+0.9
3,791,096	+		PFLU_RS16720	0.26	-1.5
3,791,097	-		PFLU_RS16720	0.26	-1.5
3,791,155	+		PFLU_RS16720	0.27	-2.6
3,791,155	+		PFLU_RS16720	0.27	-1.0
3,791,558	+		PFLU_RS16720	0.37	-1.1
3,791,559	-		PFLU_RS16720	0.37	-0.7
3,791,577	+		PFLU_RS16720	0.38	-0.3
3,791,577	+		PFLU_RS16720	0.38	-2.1
3,791,577	+		PFLU_RS16720	0.38	-0.5
3,791,577	+		PFLU_RS16720	0.38	-1.8
3,791,578	-		PFLU_RS16720	0.38	-0.7
3,791,782	+		PFLU_RS16720	0.43	-0.4
3,791,782	+		PFLU_RS16720	0.43	-1.7
3,791,976	+		PFLU_RS16720	0.48	-3.0
3,791,976	+		PFLU_RS16720	0.48	-3.5
3,791,977	-		PFLU_RS16720	0.48	-0.7
3,791,977	-		PFLU_RS16720	0.48	-0.8
3,791,977	-		PFLU_RS16720	0.48	-1.1
3,791,977	-		PFLU_RS16720	0.48	-0.9
3,791,977	-		PFLU_RS16720	0.48	-1.7
3,792,276	+		PFLU_RS16720	0.55	-1.5
3,792,277	-		PFLU_RS16720	0.55	-0.9
3,792,312	-		PFLU_RS16720	0.56	-1.1
3,792,312	-		PFLU_RS16720	0.56	-0.9
3,792,312	-		PFLU_RS16720	0.56	-2.7
3,792,452	-		PFLU_RS16720	0.60	-1.5
3,792,762	-		PFLU_RS16720	0.68	-0.2
3,792,762	-		PFLU_RS16720	0.68	-2.6
3,793,064	+		PFLU_RS16720	0.75	-1.1
3,793,064	+		PFLU_RS16720	0.75	-0.1
3,793,064	+		PFLU_RS16720	0.75	-1.7
3,793,064	+		PFLU_RS16720	0.75	-0.9
3,793,064	+		PFLU_RS16720	0.75	-2.1
3,793,065	-		PFLU_RS16720	0.75	+0.5
3,793,065	-		PFLU_RS16720	0.75	-0.7
3,793,065	-		PFLU_RS16720	0.75	+0.9
3,793,065	-		PFLU_RS16720	0.75	-0.6
3,793,065	-		PFLU_RS16720	0.75	-2.8
3,793,065	-		PFLU_RS16720	0.75	-2.3
3,793,241	-		PFLU_RS16720	0.80	+0.0
3,793,241	-		PFLU_RS16720	0.80	-3.1
3,793,241	-		PFLU_RS16720	0.80	-1.0
3,793,356	+		PFLU_RS16720	0.83	-0.1
3,793,405	+		PFLU_RS16720	0.84	-1.1
3,793,427	+		PFLU_RS16720	0.84	-2.1
3,793,428	-		PFLU_RS16720	0.84	-1.7
3,793,739	+				-3.2
3,793,739	+				+0.5
3,793,739	+				-1.0
3,793,739	+				-2.9
3,793,740	-				-0.3
3,793,740	-				+0.9
3,793,740	-				-2.1
3,793,740	-				+0.3
3,793,740	-				-0.3
3,793,742	+				-1.7
3,793,742	+				-3.2
3,793,743	-				-0.9
3,793,743	-				-1.8
3,793,829	+				-2.3
3,793,830	-				-3.3
3,793,830	-				-1.7
3,793,898	+				-1.4
3,793,898	+				-3.1
3,793,898	+				-1.7
3,793,899	-				-1.5
3,793,899	-				-2.7
3,793,899	-				-1.1
3,793,899	-				+0.3
3,793,921	+				-1.9
3,794,031	-				-2.3
3,794,077	+				+0.5
3,794,104	+				+1.1
3,794,104	+				+0.8
3,794,105	-				+0.1
3,794,150	+				+1.5
3,794,151	-				-0.1
3,794,151	-				+0.9
3,794,208	+				+0.6
3,794,208	+				-0.4
3,794,216	-				+1.5
3,794,224	-				+1.9
3,794,248	+				+0.6
3,794,415	+		PFLU_RS16725	0.11	+1.0
3,794,415	+		PFLU_RS16725	0.11	-3.2
3,794,415	+		PFLU_RS16725	0.11	-1.5
3,794,416	-		PFLU_RS16725	0.11	-1.7
3,794,416	-		PFLU_RS16725	0.11	-3.5
3,794,417	+		PFLU_RS16725	0.11	+1.3
3,794,417	+		PFLU_RS16725	0.11	-0.1
3,794,417	+		PFLU_RS16725	0.11	-0.1
3,794,417	+		PFLU_RS16725	0.11	-2.5
3,794,417	+		PFLU_RS16725	0.11	+0.4
3,794,417	+		PFLU_RS16725	0.11	+1.3
3,794,417	+		PFLU_RS16725	0.11	-1.7
3,794,417	+		PFLU_RS16725	0.11	-1.7
3,794,418	-		PFLU_RS16725	0.11	+0.1
3,794,418	-		PFLU_RS16725	0.11	+1.1
3,794,418	-		PFLU_RS16725	0.11	+1.4
3,794,418	-		PFLU_RS16725	0.11	+1.6
3,794,418	-		PFLU_RS16725	0.11	-0.0
3,794,418	-		PFLU_RS16725	0.11	-1.5
3,794,418	-		PFLU_RS16725	0.11	+0.5
3,794,418	-		PFLU_RS16725	0.11	+0.9
3,794,418	-		PFLU_RS16725	0.11	-0.7
3,794,445	-		PFLU_RS16725	0.13	+0.5
3,794,445	-		PFLU_RS16725	0.13	-1.1
3,794,573	+		PFLU_RS16725	0.19	+0.6
3,794,573	+		PFLU_RS16725	0.19	+1.3
3,794,573	+		PFLU_RS16725	0.19	-0.7
3,794,573	+		PFLU_RS16725	0.19	-0.1
3,794,573	+		PFLU_RS16725	0.19	+0.3
3,794,574	-		PFLU_RS16725	0.19	+0.9
3,794,574	-		PFLU_RS16725	0.19	+1.0
3,794,574	-		PFLU_RS16725	0.19	-1.7
3,794,574	-		PFLU_RS16725	0.19	-0.6
3,794,574	-		PFLU_RS16725	0.19	-0.7
3,794,609	+		PFLU_RS16725	0.21	+0.3
3,794,609	+		PFLU_RS16725	0.21	-1.5
3,794,609	+		PFLU_RS16725	0.21	-0.7
3,794,609	+		PFLU_RS16725	0.21	+1.1
3,794,609	+		PFLU_RS16725	0.21	+0.0
3,794,610	-		PFLU_RS16725	0.21	+1.0
3,794,610	-		PFLU_RS16725	0.21	+0.9
3,794,610	-		PFLU_RS16725	0.21	-0.1
3,794,633	+		PFLU_RS16725	0.22	+0.5
3,794,633	+		PFLU_RS16725	0.22	-0.5
3,794,634	-		PFLU_RS16725	0.22	+0.1
3,794,634	-		PFLU_RS16725	0.22	+0.9
3,794,634	-		PFLU_RS16725	0.22	+0.7
3,794,634	-		PFLU_RS16725	0.22	+0.3
3,794,634	-		PFLU_RS16725	0.22	-1.1
3,794,634	-		PFLU_RS16725	0.22	+1.1
3,794,681	+		PFLU_RS16725	0.25	+2.2
3,794,682	-		PFLU_RS16725	0.25	+1.1
3,794,682	-		PFLU_RS16725	0.25	-0.6
3,794,682	-		PFLU_RS16725	0.25	+1.2
3,794,682	-		PFLU_RS16725	0.25	-0.3
3,794,684	+		PFLU_RS16725	0.25	+0.7
3,794,684	+		PFLU_RS16725	0.25	+0.3
3,794,684	+		PFLU_RS16725	0.25	-0.1
3,794,684	+		PFLU_RS16725	0.25	-2.3
3,794,684	+		PFLU_RS16725	0.25	+1.5
3,794,685	-		PFLU_RS16725	0.25	-1.0
3,794,685	-		PFLU_RS16725	0.25	-2.1
3,794,685	-		PFLU_RS16725	0.25	+2.0
3,794,685	-		PFLU_RS16725	0.25	-0.1
3,794,688	-		PFLU_RS16725	0.25	-1.3
3,794,688	-		PFLU_RS16725	0.25	+0.0
3,794,757	+		PFLU_RS16725	0.29	+1.3
3,794,828	+		PFLU_RS16725	0.32	-0.9
3,794,829	-		PFLU_RS16725	0.32	+0.3
3,794,829	-		PFLU_RS16725	0.32	+2.5
3,794,862	+		PFLU_RS16725	0.34	+0.6
3,794,862	+		PFLU_RS16725	0.34	-0.9
3,794,918	+		PFLU_RS16725	0.37	-0.2
3,794,919	-		PFLU_RS16725	0.37	+0.4
3,794,919	-		PFLU_RS16725	0.37	-0.1
3,794,978	+		PFLU_RS16725	0.40	+0.5
3,794,978	+		PFLU_RS16725	0.40	+1.5
3,794,978	+		PFLU_RS16725	0.40	-1.5
3,794,978	+		PFLU_RS16725	0.40	-1.1
3,794,978	+		PFLU_RS16725	0.40	-0.7
3,794,978	+		PFLU_RS16725	0.40	+1.7
3,794,978	+		PFLU_RS16725	0.40	+1.6
3,794,979	-		PFLU_RS16725	0.40	+0.5
3,794,979	-		PFLU_RS16725	0.40	-0.5
3,795,020	+		PFLU_RS16725	0.42	+1.1
3,795,020	+		PFLU_RS16725	0.42	+0.9