Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02685

Experiment: Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02680 and AO353_02685 are separated by 11 nucleotidesAO353_02685 and AO353_02690 are separated by 8 nucleotidesAO353_02690 and AO353_02695 are separated by 267 nucleotides AO353_02680: AO353_02680 - phosphoribosylaminoimidazole synthetase, at 570,072 to 571,130 _02680 AO353_02685: AO353_02685 - phosphoribosylglycinamide formyltransferase, at 571,142 to 571,792 _02685 AO353_02690: AO353_02690 - dehydrogenase, at 571,801 to 572,514 _02690 AO353_02695: AO353_02695 - hypothetical protein, at 572,782 to 572,970 _02695 Position (kb) 571 572Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 571.496 kb on + strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.507 kb on - strand, within AO353_02685at 571.611 kb on + strand, within AO353_02685at 571.612 kb on - strand, within AO353_02685at 571.615 kb on - strand, within AO353_02685at 571.683 kb on - strand, within AO353_02685at 571.759 kb on - strandat 571.790 kb on + strandat 571.790 kb on + strandat 571.790 kb on + strandat 571.790 kb on + strandat 571.791 kb on - strandat 571.791 kb on - strandat 571.800 kb on + strandat 571.800 kb on + strandat 571.800 kb on + strandat 571.801 kb on - strandat 571.801 kb on - strandat 571.801 kb on - strandat 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.886 kb on - strand, within AO353_02690at 572.053 kb on + strand, within AO353_02690at 572.160 kb on - strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.219 kb on + strand, within AO353_02690at 572.220 kb on - strand, within AO353_02690at 572.220 kb on - strand, within AO353_02690at 572.220 kb on - strand, within AO353_02690at 572.245 kb on + strand, within AO353_02690at 572.245 kb on + strand, within AO353_02690at 572.245 kb on + strand, within AO353_02690at 572.246 kb on - strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.413 kb on + strand, within AO353_02690at 572.413 kb on + strand, within AO353_02690at 572.413 kb on + strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.512 kb on + strandat 572.512 kb on + strandat 572.512 kb on + strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.704 kb on + strandat 572.704 kb on + strandat 572.726 kb on + strandat 572.726 kb on + strandat 572.726 kb on + strandat 572.727 kb on - strandat 572.728 kb on + strandat 572.728 kb on + strandat 572.728 kb on + strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 1 mg/ml
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571,496 + AO353_02685 0.54 -1.3
571,497 - AO353_02685 0.55 -0.0
571,497 - AO353_02685 0.55 -2.4
571,497 - AO353_02685 0.55 -0.2
571,497 - AO353_02685 0.55 -0.1
571,497 - AO353_02685 0.55 +0.7
571,507 - AO353_02685 0.56 -2.2
571,611 + AO353_02685 0.72 -2.4
571,612 - AO353_02685 0.72 -0.0
571,615 - AO353_02685 0.73 -0.5
571,683 - AO353_02685 0.83 -1.0
571,759 - +0.4
571,790 + -0.7
571,790 + +0.5
571,790 + +0.4
571,790 + -1.7
571,791 - -0.1
571,791 - +0.4
571,800 + +0.7
571,800 + +0.3
571,800 + +0.3
571,801 - +2.1
571,801 - -1.4
571,801 - +0.3
571,885 + AO353_02690 0.12 +0.3
571,885 + AO353_02690 0.12 +0.0
571,885 + AO353_02690 0.12 +0.3
571,885 + AO353_02690 0.12 -0.0
571,885 + AO353_02690 0.12 +0.4
571,885 + AO353_02690 0.12 +1.6
571,886 - AO353_02690 0.12 +1.1
572,053 + AO353_02690 0.35 -0.1
572,160 - AO353_02690 0.50 +0.0
572,194 + AO353_02690 0.55 +0.2
572,194 + AO353_02690 0.55 -0.1
572,194 + AO353_02690 0.55 -0.8
572,194 + AO353_02690 0.55 +1.2
572,195 - AO353_02690 0.55 -1.1
572,195 - AO353_02690 0.55 -0.9
572,195 - AO353_02690 0.55 +0.3
572,195 - AO353_02690 0.55 +1.5
572,195 - AO353_02690 0.55 -0.1
572,219 + AO353_02690 0.59 +1.2
572,220 - AO353_02690 0.59 +1.2
572,220 - AO353_02690 0.59 +0.0
572,220 - AO353_02690 0.59 -0.3
572,245 + AO353_02690 0.62 -0.5
572,245 + AO353_02690 0.62 +0.2
572,245 + AO353_02690 0.62 +1.4
572,246 - AO353_02690 0.62 +1.1
572,278 + AO353_02690 0.67 +0.2
572,278 + AO353_02690 0.67 -0.9
572,278 + AO353_02690 0.67 +0.6
572,278 + AO353_02690 0.67 +0.7
572,278 + AO353_02690 0.67 +0.2
572,278 + AO353_02690 0.67 +0.5
572,278 + AO353_02690 0.67 +0.5
572,279 - AO353_02690 0.67 +0.2
572,279 - AO353_02690 0.67 +0.6
572,279 - AO353_02690 0.67 -0.9
572,279 - AO353_02690 0.67 +1.4
572,279 - AO353_02690 0.67 -0.6
572,279 - AO353_02690 0.67 +1.3
572,413 + AO353_02690 0.86 -0.9
572,413 + AO353_02690 0.86 -0.0
572,413 + AO353_02690 0.86 +1.6
572,414 - AO353_02690 0.86 +0.7
572,414 - AO353_02690 0.86 +1.4
572,414 - AO353_02690 0.86 -0.4
572,414 - AO353_02690 0.86 +0.9
572,414 - AO353_02690 0.86 +0.6
572,414 - AO353_02690 0.86 -0.3
572,414 - AO353_02690 0.86 +0.6
572,458 + +0.8
572,458 + +0.7
572,458 + +0.6
572,458 + -0.1
572,458 + -0.4
572,458 + +2.4
572,459 - -0.7
572,459 - -0.2
572,459 - -0.0
572,459 - +0.5
572,459 - +0.3
572,512 + +0.1
572,512 + -0.5
572,512 + -0.2
572,513 - +1.2
572,513 - -0.5
572,513 - -0.2
572,513 - -0.3
572,513 - +1.6
572,704 + -0.3
572,704 + -0.1
572,726 + -0.5
572,726 + +1.4
572,726 + +3.7
572,727 - -0.1
572,728 + -1.0
572,728 + +0.9
572,728 + +0.2
572,729 - -0.9
572,729 - -2.9
572,729 - -0.5
572,729 - -0.3
572,729 - +1.3
572,729 - +0.9
572,729 - +0.5
572,729 - -3.0
572,729 - +0.1
572,789 + +0.2
572,789 + -1.3
572,789 + +1.1
572,789 + +0.8
572,789 + -1.8
572,789 + -0.8
572,790 - +0.6

Or see this region's nucleotide sequence