Strain Fitness in Shewanella loihica PV-4 around Shew_1735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1733 and Shew_1734 are separated by 30 nucleotidesShew_1734 and Shew_1735 are separated by 321 nucleotidesShew_1735 and Shew_1736 are separated by 64 nucleotidesShew_1736 and Shew_1737 are separated by 43 nucleotides Shew_1733: Shew_1733 - thioesterase superfamily protein (RefSeq), at 1,984,164 to 1,984,628 _1733 Shew_1734: Shew_1734 - hypothetical protein (RefSeq), at 1,984,659 to 1,985,048 _1734 Shew_1735: Shew_1735 - TonB-dependent receptor (RefSeq), at 1,985,370 to 1,987,511 _1735 Shew_1736: Shew_1736 - hypothetical protein (RefSeq), at 1,987,576 to 1,987,836 _1736 Shew_1737: Shew_1737 - nicotinamide mononucleotide transporter PnuC (RefSeq), at 1,987,880 to 1,988,527 _1737 Position (kb) 1985 1986 1987 1988Strain fitness (log2 ratio) -2 -1 0 1at 1984.449 kb on - strand, within Shew_1733at 1984.945 kb on + strand, within Shew_1734at 1984.945 kb on + strand, within Shew_1734at 1985.822 kb on + strand, within Shew_1735at 1986.335 kb on + strand, within Shew_1735at 1986.523 kb on - strand, within Shew_1735at 1986.770 kb on - strand, within Shew_1735at 1986.865 kb on + strand, within Shew_1735at 1986.865 kb on + strand, within Shew_1735at 1987.312 kb on - strandat 1987.653 kb on + strand, within Shew_1736at 1987.984 kb on - strand, within Shew_1737at 1988.424 kb on + strand, within Shew_1737at 1988.424 kb on + strand, within Shew_1737at 1988.432 kb on - strand, within Shew_1737at 1988.432 kb on - strand, within Shew_1737at 1988.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,984,449 - Shew_1733 0.61 +0.6
1,984,945 + Shew_1734 0.73 +0.1
1,984,945 + Shew_1734 0.73 +0.4
1,985,822 + Shew_1735 0.21 +0.1
1,986,335 + Shew_1735 0.45 -0.8
1,986,523 - Shew_1735 0.54 -0.4
1,986,770 - Shew_1735 0.65 -1.8
1,986,865 + Shew_1735 0.70 -0.6
1,986,865 + Shew_1735 0.70 -0.1
1,987,312 - +0.2
1,987,653 + Shew_1736 0.30 -0.5
1,987,984 - Shew_1737 0.16 -1.6
1,988,424 + Shew_1737 0.84 -0.2
1,988,424 + Shew_1737 0.84 -0.0
1,988,432 - Shew_1737 0.85 +0.1
1,988,432 - Shew_1737 0.85 -0.8
1,988,463 + -0.3

Or see this region's nucleotide sequence