Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF881

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF880 and GFF881 are separated by 174 nucleotidesGFF881 and GFF882 overlap by 4 nucleotidesGFF882 and GFF883 are separated by 233 nucleotides GFF880 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 58,847 to 59,845 GFF880 GFF881 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 60,020 to 61,399 GFF881 GFF882 - FIG01048950: hypothetical protein, at 61,396 to 61,656 GFF882 GFF883 - Predicted transcriptional regulator of the myo-inositol catabolic operon, at 61,890 to 62,723 GFF883 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 59.077 kb on - strand, within GFF880at 59.130 kb on + strand, within GFF880at 59.142 kb on + strand, within GFF880at 59.217 kb on + strand, within GFF880at 59.222 kb on - strand, within GFF880at 59.266 kb on + strand, within GFF880at 59.266 kb on + strand, within GFF880at 59.266 kb on + strand, within GFF880at 59.267 kb on - strand, within GFF880at 59.267 kb on - strand, within GFF880at 59.307 kb on + strand, within GFF880at 59.364 kb on + strand, within GFF880at 59.365 kb on - strand, within GFF880at 59.374 kb on - strand, within GFF880at 59.533 kb on - strand, within GFF880at 59.533 kb on - strand, within GFF880at 59.603 kb on - strand, within GFF880at 59.825 kb on - strandat 60.141 kb on + strandat 60.142 kb on - strandat 60.177 kb on - strand, within GFF881at 60.283 kb on + strand, within GFF881at 60.283 kb on + strand, within GFF881at 60.284 kb on - strand, within GFF881at 60.504 kb on - strand, within GFF881at 60.999 kb on - strand, within GFF881at 61.106 kb on - strand, within GFF881at 61.126 kb on - strand, within GFF881at 61.230 kb on + strand, within GFF881at 61.261 kb on + strand, within GFF881at 61.395 kb on - strandat 61.395 kb on - strandat 61.439 kb on - strand, within GFF882at 61.534 kb on + strand, within GFF882at 61.563 kb on - strand, within GFF882at 61.566 kb on - strand, within GFF882at 61.570 kb on + strand, within GFF882at 61.646 kb on - strandat 61.646 kb on - strandat 61.711 kb on - strandat 61.794 kb on - strandat 61.849 kb on - strandat 61.895 kb on + strandat 61.983 kb on + strand, within GFF883at 62.000 kb on + strand, within GFF883at 62.000 kb on + strand, within GFF883at 62.001 kb on - strand, within GFF883at 62.003 kb on + strand, within GFF883at 62.004 kb on - strand, within GFF883at 62.023 kb on + strand, within GFF883at 62.103 kb on - strand, within GFF883at 62.154 kb on + strand, within GFF883at 62.263 kb on + strand, within GFF883at 62.343 kb on + strand, within GFF883at 62.383 kb on - strand, within GFF883

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
remove
59,077 - GFF880 0.23 -0.1
59,130 + GFF880 0.28 +0.5
59,142 + GFF880 0.30 -0.2
59,217 + GFF880 0.37 +0.0
59,222 - GFF880 0.38 -0.3
59,266 + GFF880 0.42 +0.6
59,266 + GFF880 0.42 -0.0
59,266 + GFF880 0.42 -0.2
59,267 - GFF880 0.42 -0.1
59,267 - GFF880 0.42 -0.1
59,307 + GFF880 0.46 -0.3
59,364 + GFF880 0.52 +0.3
59,365 - GFF880 0.52 -0.9
59,374 - GFF880 0.53 +0.2
59,533 - GFF880 0.69 +0.5
59,533 - GFF880 0.69 -0.2
59,603 - GFF880 0.76 +0.9
59,825 - -0.2
60,141 + +0.3
60,142 - -0.6
60,177 - GFF881 0.11 -1.1
60,283 + GFF881 0.19 -0.4
60,283 + GFF881 0.19 -0.6
60,284 - GFF881 0.19 -1.2
60,504 - GFF881 0.35 -0.4
60,999 - GFF881 0.71 -0.3
61,106 - GFF881 0.79 -0.2
61,126 - GFF881 0.80 -1.1
61,230 + GFF881 0.88 +0.9
61,261 + GFF881 0.90 +0.8
61,395 - +0.5
61,395 - -0.2
61,439 - GFF882 0.16 +0.3
61,534 + GFF882 0.53 +0.1
61,563 - GFF882 0.64 -0.2
61,566 - GFF882 0.65 +0.4
61,570 + GFF882 0.67 -0.0
61,646 - -1.5
61,646 - -0.1
61,711 - +0.1
61,794 - +0.3
61,849 - +1.0
61,895 + +1.3
61,983 + GFF883 0.11 -0.1
62,000 + GFF883 0.13 +0.6
62,000 + GFF883 0.13 +0.6
62,001 - GFF883 0.13 -2.2
62,003 + GFF883 0.14 +0.2
62,004 - GFF883 0.14 +0.5
62,023 + GFF883 0.16 +0.9
62,103 - GFF883 0.26 -0.2
62,154 + GFF883 0.32 -0.0
62,263 + GFF883 0.45 -0.9
62,343 + GFF883 0.54 +0.3
62,383 - GFF883 0.59 +0.9

Or see this region's nucleotide sequence