Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF826

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF824 and GFF825 are separated by 82 nucleotidesGFF825 and GFF826 are separated by 71 nucleotidesGFF826 and GFF827 are separated by 214 nucleotides GFF824 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 6,937 to 7,842 GFF824 GFF825 - RNA-binding protein Hfq, at 7,925 to 8,233 GFF825 GFF826 - GTP-binding protein HflX, at 8,305 to 9,585 GFF826 GFF827 - HflK protein, at 9,800 to 11,059 GFF827 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7.347 kb on - strand, within GFF824at 7.660 kb on + strand, within GFF824at 7.660 kb on + strand, within GFF824at 7.681 kb on + strand, within GFF824at 7.682 kb on - strand, within GFF824at 7.686 kb on + strand, within GFF824at 7.811 kb on + strandat 7.814 kb on + strandat 7.849 kb on - strandat 7.912 kb on + strandat 8.015 kb on - strand, within GFF825at 8.089 kb on + strand, within GFF825at 8.167 kb on + strand, within GFF825at 8.168 kb on - strand, within GFF825at 8.171 kb on + strand, within GFF825at 8.232 kb on - strandat 8.290 kb on + strandat 8.290 kb on + strandat 8.291 kb on - strandat 8.291 kb on - strandat 8.354 kb on - strandat 8.487 kb on + strand, within GFF826at 8.987 kb on + strand, within GFF826at 8.987 kb on + strand, within GFF826at 9.012 kb on - strand, within GFF826at 9.243 kb on - strand, within GFF826at 9.515 kb on + strandat 9.584 kb on - strandat 9.606 kb on + strandat 9.731 kb on + strandat 9.928 kb on + strand, within GFF827at 10.063 kb on - strand, within GFF827at 10.390 kb on + strand, within GFF827at 10.394 kb on + strand, within GFF827at 10.468 kb on + strand, within GFF827

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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7,347 - GFF824 0.45 +0.3
7,660 + GFF824 0.80 +1.8
7,660 + GFF824 0.80 +0.7
7,681 + GFF824 0.82 -0.2
7,682 - GFF824 0.82 +0.5
7,686 + GFF824 0.83 +0.8
7,811 + +0.0
7,814 + -0.5
7,849 - -1.7
7,912 + -3.4
8,015 - GFF825 0.29 -2.9
8,089 + GFF825 0.53 -2.3
8,167 + GFF825 0.78 -1.7
8,168 - GFF825 0.79 -2.0
8,171 + GFF825 0.80 -1.1
8,232 - -2.3
8,290 + +0.5
8,290 + -2.7
8,291 - +0.6
8,291 - -2.0
8,354 - -0.7
8,487 + GFF826 0.14 -1.2
8,987 + GFF826 0.53 +0.3
8,987 + GFF826 0.53 -0.6
9,012 - GFF826 0.55 -0.8
9,243 - GFF826 0.73 -2.6
9,515 + +0.6
9,584 - -1.2
9,606 + -2.5
9,731 + +1.2
9,928 + GFF827 0.10 +0.3
10,063 - GFF827 0.21 -2.9
10,390 + GFF827 0.47 -1.6
10,394 + GFF827 0.47 -0.6
10,468 + GFF827 0.53 -1.3

Or see this region's nucleotide sequence