Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF729

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF728 and GFF729 are separated by 60 nucleotidesGFF729 and GFF730 are separated by 2 nucleotides GFF728 - Dipeptide transport system, periplasmic component in protein degradation cluster, at 87,069 to 88,607 GFF728 GFF729 - Dipeptide transport system permease protein DppB in protein degradation cluster, at 88,668 to 89,588 GFF729 GFF730 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 89,591 to 90,502 GFF730 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 87.719 kb on + strand, within GFF728at 87.867 kb on - strand, within GFF728at 87.876 kb on + strand, within GFF728at 87.876 kb on + strand, within GFF728at 87.877 kb on - strand, within GFF728at 87.877 kb on - strand, within GFF728at 87.878 kb on + strand, within GFF728at 87.885 kb on - strand, within GFF728at 87.911 kb on + strand, within GFF728at 87.940 kb on - strand, within GFF728at 88.208 kb on - strand, within GFF728at 88.284 kb on + strand, within GFF728at 88.285 kb on - strand, within GFF728at 88.285 kb on - strand, within GFF728at 88.285 kb on - strand, within GFF728at 88.459 kb on - strandat 88.479 kb on - strandat 88.605 kb on + strandat 88.605 kb on + strandat 88.606 kb on - strandat 88.606 kb on - strandat 88.609 kb on + strandat 88.610 kb on - strandat 88.677 kb on + strandat 88.678 kb on - strandat 88.702 kb on + strandat 88.709 kb on + strandat 88.983 kb on - strand, within GFF729at 88.983 kb on - strand, within GFF729at 88.987 kb on + strand, within GFF729at 89.278 kb on - strand, within GFF729at 89.326 kb on + strand, within GFF729at 89.426 kb on + strand, within GFF729at 89.582 kb on + strandat 89.583 kb on - strandat 89.586 kb on + strandat 89.586 kb on + strandat 89.586 kb on + strandat 89.643 kb on + strandat 89.975 kb on + strand, within GFF730at 89.975 kb on + strand, within GFF730at 89.998 kb on + strand, within GFF730at 90.148 kb on + strand, within GFF730at 90.148 kb on + strand, within GFF730at 90.176 kb on - strand, within GFF730at 90.230 kb on - strand, within GFF730at 90.231 kb on + strand, within GFF730at 90.232 kb on - strand, within GFF730at 90.232 kb on - strand, within GFF730

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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87,719 + GFF728 0.42 -0.9
87,867 - GFF728 0.52 -0.6
87,876 + GFF728 0.52 -0.4
87,876 + GFF728 0.52 -0.4
87,877 - GFF728 0.53 -0.8
87,877 - GFF728 0.53 +0.1
87,878 + GFF728 0.53 +0.1
87,885 - GFF728 0.53 +0.4
87,911 + GFF728 0.55 +1.0
87,940 - GFF728 0.57 -0.3
88,208 - GFF728 0.74 -0.7
88,284 + GFF728 0.79 -0.5
88,285 - GFF728 0.79 -0.9
88,285 - GFF728 0.79 -0.8
88,285 - GFF728 0.79 -0.7
88,459 - +0.7
88,479 - -0.3
88,605 + -0.3
88,605 + +0.4
88,606 - -0.2
88,606 - -1.2
88,609 + -0.1
88,610 - -0.5
88,677 + +0.4
88,678 - +0.9
88,702 + +0.7
88,709 + +0.2
88,983 - GFF729 0.34 -0.7
88,983 - GFF729 0.34 -1.3
88,987 + GFF729 0.35 -0.4
89,278 - GFF729 0.66 -1.5
89,326 + GFF729 0.71 -0.3
89,426 + GFF729 0.82 -0.3
89,582 + -0.2
89,583 - +0.5
89,586 + -0.0
89,586 + -0.2
89,586 + +0.3
89,643 + -0.9
89,975 + GFF730 0.42 -2.0
89,975 + GFF730 0.42 +0.2
89,998 + GFF730 0.45 +0.3
90,148 + GFF730 0.61 -0.9
90,148 + GFF730 0.61 +0.4
90,176 - GFF730 0.64 +0.3
90,230 - GFF730 0.70 -0.8
90,231 + GFF730 0.70 +0.3
90,232 - GFF730 0.70 +0.0
90,232 - GFF730 0.70 +0.3

Or see this region's nucleotide sequence