Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4688

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4686 and GFF4687 are separated by 9 nucleotidesGFF4687 and GFF4688 are separated by 59 nucleotidesGFF4688 and GFF4689 are separated by 71 nucleotides GFF4686 - Phage minor tail protein, at 14,975 to 15,670 GFF4686 GFF4687 - Phage tail assembly protein, at 15,680 to 16,417 GFF4687 GFF4688 - Phage tail assembly protein I, at 16,477 to 17,019 GFF4688 GFF4689 - Phage tail fiber protein, at 17,091 to 19,538 GFF4689 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1 2at 15.619 kb on + strandat 15.668 kb on + strandat 15.817 kb on + strand, within GFF4687at 15.818 kb on - strand, within GFF4687at 15.818 kb on - strand, within GFF4687at 15.919 kb on + strand, within GFF4687at 15.930 kb on + strand, within GFF4687at 15.972 kb on + strand, within GFF4687at 15.972 kb on + strand, within GFF4687at 15.972 kb on + strand, within GFF4687at 15.976 kb on + strand, within GFF4687at 16.037 kb on + strand, within GFF4687at 16.038 kb on - strand, within GFF4687at 16.058 kb on + strand, within GFF4687at 16.078 kb on + strand, within GFF4687at 16.120 kb on + strand, within GFF4687at 16.131 kb on - strand, within GFF4687at 16.305 kb on - strand, within GFF4687at 16.305 kb on - strand, within GFF4687at 16.436 kb on + strandat 16.586 kb on + strand, within GFF4688at 16.593 kb on + strand, within GFF4688at 17.021 kb on - strandat 17.077 kb on - strandat 17.077 kb on - strandat 17.117 kb on + strandat 17.117 kb on + strandat 17.118 kb on - strandat 17.270 kb on + strandat 17.271 kb on - strandat 17.271 kb on - strandat 17.271 kb on - strandat 17.292 kb on + strandat 17.293 kb on - strandat 17.577 kb on + strand, within GFF4689at 17.796 kb on + strand, within GFF4689at 17.856 kb on + strand, within GFF4689at 17.856 kb on + strand, within GFF4689at 17.858 kb on + strand, within GFF4689at 17.858 kb on + strand, within GFF4689at 17.858 kb on + strand, within GFF4689at 17.882 kb on + strand, within GFF4689at 17.893 kb on - strand, within GFF4689at 17.981 kb on + strand, within GFF4689at 17.981 kb on + strand, within GFF4689at 17.981 kb on + strand, within GFF4689at 17.994 kb on + strand, within GFF4689

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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15,619 + +0.4
15,668 + -0.6
15,817 + GFF4687 0.19 +0.2
15,818 - GFF4687 0.19 +0.2
15,818 - GFF4687 0.19 -0.5
15,919 + GFF4687 0.32 -0.1
15,930 + GFF4687 0.34 +0.3
15,972 + GFF4687 0.40 -0.6
15,972 + GFF4687 0.40 +0.8
15,972 + GFF4687 0.40 +0.4
15,976 + GFF4687 0.40 +0.1
16,037 + GFF4687 0.48 +0.2
16,038 - GFF4687 0.49 -1.2
16,058 + GFF4687 0.51 +0.1
16,078 + GFF4687 0.54 -0.0
16,120 + GFF4687 0.60 -0.0
16,131 - GFF4687 0.61 +0.3
16,305 - GFF4687 0.85 +0.6
16,305 - GFF4687 0.85 -2.5
16,436 + -0.1
16,586 + GFF4688 0.20 -0.6
16,593 + GFF4688 0.21 -1.6
17,021 - -1.6
17,077 - +1.8
17,077 - +0.1
17,117 + +1.1
17,117 + +0.7
17,118 - -1.6
17,270 + +0.5
17,271 - +0.1
17,271 - +0.8
17,271 - -0.7
17,292 + +0.2
17,293 - -0.0
17,577 + GFF4689 0.20 -0.1
17,796 + GFF4689 0.29 +0.0
17,856 + GFF4689 0.31 -0.3
17,856 + GFF4689 0.31 +0.4
17,858 + GFF4689 0.31 +0.1
17,858 + GFF4689 0.31 +0.7
17,858 + GFF4689 0.31 +0.0
17,882 + GFF4689 0.32 +0.3
17,893 - GFF4689 0.33 -0.3
17,981 + GFF4689 0.36 +0.2
17,981 + GFF4689 0.36 -0.4
17,981 + GFF4689 0.36 -1.5
17,994 + GFF4689 0.37 +0.8

Or see this region's nucleotide sequence