Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3583

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3582 and GFF3583 are separated by 418 nucleotidesGFF3583 and GFF3584 are separated by 1 nucleotides GFF3582 - Secretion system regulator: Sensor component (EC 2.7.3.-) (EC 2.7.1.40), at 338,889 to 341,651 GFF3582 GFF3583 - Type III secretion protein SsaB, at 342,070 to 342,453 GFF3583 GFF3584 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 342,455 to 343,948 GFF3584 Position (kb) 342 343Strain fitness (log2 ratio) -1 0 1at 341.149 kb on - strand, within GFF3582at 341.943 kb on - strandat 342.258 kb on - strand, within GFF3583at 342.985 kb on - strand, within GFF3584at 342.989 kb on - strand, within GFF3584at 342.990 kb on + strand, within GFF3584at 342.991 kb on - strand, within GFF3584at 343.000 kb on + strand, within GFF3584at 343.000 kb on + strand, within GFF3584at 343.001 kb on - strand, within GFF3584at 343.367 kb on - strand, within GFF3584

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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341,149 - GFF3582 0.82 +1.1
341,943 - -0.7
342,258 - GFF3583 0.49 -0.6
342,985 - GFF3584 0.35 -0.9
342,989 - GFF3584 0.36 +0.5
342,990 + GFF3584 0.36 -0.1
342,991 - GFF3584 0.36 +0.3
343,000 + GFF3584 0.36 -0.4
343,000 + GFF3584 0.36 -0.1
343,001 - GFF3584 0.37 -0.9
343,367 - GFF3584 0.61 -0.7

Or see this region's nucleotide sequence