Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3303 and GFF3304 are separated by 892 nucleotides GFF3304 and GFF3305 are separated by 105 nucleotides
GFF3303 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 73,847 to 75,355
GFF3303
GFF3304 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 76,248 to 77,036
GFF3304
GFF3305 - Sialic acid utilization regulator, RpiR family, at 77,142 to 78,023
GFF3305
Position (kb)
76
77
78 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 75.411 kb on - strand at 75.432 kb on - strand at 75.554 kb on - strand at 75.556 kb on - strand at 75.556 kb on - strand at 75.576 kb on + strand at 75.602 kb on - strand at 75.912 kb on + strand at 75.917 kb on - strand at 75.922 kb on + strand at 75.925 kb on + strand at 76.009 kb on - strand at 76.106 kb on + strand at 76.106 kb on + strand at 76.107 kb on - strand at 76.153 kb on - strand at 76.160 kb on - strand at 76.222 kb on + strand at 76.223 kb on - strand at 76.223 kb on - strand at 76.224 kb on + strand at 76.228 kb on + strand at 76.229 kb on - strand at 76.322 kb on + strand at 76.406 kb on + strand, within GFF3304 at 76.705 kb on - strand, within GFF3304 at 76.753 kb on - strand, within GFF3304 at 76.754 kb on + strand, within GFF3304 at 76.767 kb on - strand, within GFF3304 at 77.035 kb on - strand at 77.040 kb on - strand at 77.224 kb on + strand at 77.337 kb on - strand, within GFF3305 at 77.468 kb on + strand, within GFF3305 at 77.484 kb on - strand, within GFF3305 at 77.650 kb on - strand, within GFF3305 at 77.669 kb on + strand, within GFF3305 at 77.669 kb on + strand, within GFF3305 at 77.815 kb on + strand, within GFF3305 at 77.885 kb on + strand, within GFF3305 at 77.886 kb on - strand, within GFF3305 at 78.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI remove 75,411 - +1.9 75,432 - -1.4 75,554 - +0.2 75,556 - -0.2 75,556 - -0.0 75,576 + +0.6 75,602 - -0.2 75,912 + -0.4 75,917 - +0.4 75,922 + +0.2 75,925 + -0.3 76,009 - -0.6 76,106 + +0.1 76,106 + +0.5 76,107 - +0.5 76,153 - +0.6 76,160 - +2.5 76,222 + -0.0 76,223 - +1.0 76,223 - -0.7 76,224 + -1.1 76,228 + +0.4 76,229 - -0.2 76,322 + +0.3 76,406 + GFF3304 0.20 -2.0 76,705 - GFF3304 0.58 +0.2 76,753 - GFF3304 0.64 +0.9 76,754 + GFF3304 0.64 +0.1 76,767 - GFF3304 0.66 -0.1 77,035 - +0.6 77,040 - -0.0 77,224 + -0.1 77,337 - GFF3305 0.22 -0.2 77,468 + GFF3305 0.37 +1.0 77,484 - GFF3305 0.39 -0.2 77,650 - GFF3305 0.58 -0.7 77,669 + GFF3305 0.60 +0.6 77,669 + GFF3305 0.60 +0.6 77,815 + GFF3305 0.76 -0.4 77,885 + GFF3305 0.84 -0.4 77,886 - GFF3305 0.84 -0.7 78,023 + -0.3
Or see this region's nucleotide sequence