Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1111 and Pf6N2E2_1112 are separated by 2 nucleotides Pf6N2E2_1112 and Pf6N2E2_1113 are separated by 154 nucleotides Pf6N2E2_1113 and Pf6N2E2_1114 are separated by 567 nucleotides
Pf6N2E2_1111 - cell wall degradation protein, at 1,303,041 to 1,304,567
_1111
Pf6N2E2_1112 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 1,304,570 to 1,305,199
_1112
Pf6N2E2_1113 - Transcriptional regulator, TetR family, at 1,305,354 to 1,305,905
_1113
Pf6N2E2_1114 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 1,306,473 to 1,309,034
_1114
Position (kb)
1305
1306 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1304.505 kb on + strand at 1304.505 kb on + strand at 1304.506 kb on - strand at 1304.506 kb on - strand at 1304.506 kb on - strand at 1304.520 kb on + strand at 1304.520 kb on + strand at 1304.521 kb on - strand at 1304.766 kb on + strand, within Pf6N2E2_1112 at 1305.238 kb on + strand at 1305.239 kb on - strand at 1305.239 kb on - strand at 1305.239 kb on - strand at 1305.249 kb on + strand at 1305.453 kb on + strand, within Pf6N2E2_1113 at 1305.496 kb on - strand, within Pf6N2E2_1113 at 1305.496 kb on - strand, within Pf6N2E2_1113 at 1305.594 kb on + strand, within Pf6N2E2_1113 at 1305.688 kb on - strand, within Pf6N2E2_1113 at 1306.010 kb on + strand at 1306.010 kb on + strand at 1306.011 kb on - strand at 1306.080 kb on + strand at 1306.349 kb on + strand at 1306.349 kb on + strand at 1306.349 kb on + strand at 1306.350 kb on - strand at 1306.626 kb on + strand at 1306.626 kb on + strand at 1306.627 kb on - strand at 1306.651 kb on - strand at 1306.701 kb on + strand at 1306.702 kb on - strand at 1306.798 kb on - strand, within Pf6N2E2_1114 at 1306.878 kb on + strand, within Pf6N2E2_1114 at 1306.879 kb on - strand, within Pf6N2E2_1114 at 1306.879 kb on - strand, within Pf6N2E2_1114
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 1,304,505 + -0.2 1,304,505 + -0.6 1,304,506 - -0.3 1,304,506 - -3.0 1,304,506 - -0.3 1,304,520 + -0.4 1,304,520 + -1.0 1,304,521 - +1.0 1,304,766 + Pf6N2E2_1112 0.31 +0.5 1,305,238 + +0.5 1,305,239 - -1.0 1,305,239 - -0.7 1,305,239 - -0.0 1,305,249 + +0.7 1,305,453 + Pf6N2E2_1113 0.18 -0.2 1,305,496 - Pf6N2E2_1113 0.26 -0.2 1,305,496 - Pf6N2E2_1113 0.26 -0.4 1,305,594 + Pf6N2E2_1113 0.43 -0.7 1,305,688 - Pf6N2E2_1113 0.61 -0.6 1,306,010 + +0.3 1,306,010 + +0.0 1,306,011 - -0.4 1,306,080 + -0.4 1,306,349 + +0.2 1,306,349 + -0.3 1,306,349 + -1.2 1,306,350 - -0.2 1,306,626 + +0.1 1,306,626 + +0.7 1,306,627 - -0.1 1,306,651 - +0.2 1,306,701 + +0.3 1,306,702 - -0.3 1,306,798 - Pf6N2E2_1114 0.13 -0.8 1,306,878 + Pf6N2E2_1114 0.16 -1.1 1,306,879 - Pf6N2E2_1114 0.16 +0.2 1,306,879 - Pf6N2E2_1114 0.16 +0.7
Or see this region's nucleotide sequence