Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.136.1 and Xcc-8004.137.1 are separated by 299 nucleotides Xcc-8004.137.1 and Xcc-8004.138.1 overlap by 2 nucleotides Xcc-8004.138.1 and Xcc-8004.139.1 overlap by 1 nucleotides Xcc-8004.139.1 and Xcc-8004.140.1 are separated by 6 nucleotides
Xcc-8004.136.1: Xcc-8004.136.1 - FIG01210906: hypothetical protein, at 124,646 to 125,038
Xcc-8004.136.1
Xcc-8004.137.1: Xcc-8004.137.1 - FIG01209674: hypothetical protein, at 125,338 to 125,499
Xcc-8004.137.1
Xcc-8004.138.1: Xcc-8004.138.1 - FIG01211329: hypothetical protein, at 125,498 to 126,046
Xcc-8004.138.1
Xcc-8004.139.1: Xcc-8004.139.1 - Ku domain protein, at 126,046 to 126,987
Xcc-8004.139.1
Xcc-8004.140.1: Xcc-8004.140.1 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 126,994 to 129,999
Xcc-8004.140.1
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.504 kb on - strand at 124.504 kb on - strand at 124.504 kb on - strand at 124.504 kb on - strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.645 kb on - strand at 124.645 kb on - strand at 124.645 kb on - strand at 124.645 kb on - strand at 124.695 kb on + strand, within Xcc-8004.136.1 at 124.710 kb on + strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.862 kb on + strand, within Xcc-8004.136.1 at 124.862 kb on + strand, within Xcc-8004.136.1 at 124.863 kb on - strand, within Xcc-8004.136.1 at 124.863 kb on - strand, within Xcc-8004.136.1 at 124.864 kb on + strand, within Xcc-8004.136.1 at 124.865 kb on - strand, within Xcc-8004.136.1 at 124.865 kb on - strand, within Xcc-8004.136.1 at 124.886 kb on + strand, within Xcc-8004.136.1 at 125.037 kb on - strand at 125.037 kb on - strand at 125.037 kb on - strand at 125.064 kb on + strand at 125.065 kb on - strand at 125.065 kb on - strand at 125.088 kb on + strand at 125.088 kb on + strand at 125.089 kb on - strand at 125.089 kb on - strand at 125.089 kb on - strand at 125.207 kb on + strand at 125.208 kb on - strand at 125.208 kb on - strand at 125.208 kb on - strand at 125.239 kb on + strand at 125.239 kb on + strand at 125.239 kb on + strand at 125.240 kb on - strand at 125.252 kb on + strand at 125.252 kb on + strand at 125.253 kb on - strand at 125.339 kb on + strand at 125.339 kb on + strand at 125.370 kb on + strand, within Xcc-8004.137.1 at 125.370 kb on + strand, within Xcc-8004.137.1 at 125.426 kb on + strand, within Xcc-8004.137.1 at 125.426 kb on + strand, within Xcc-8004.137.1 at 125.427 kb on - strand, within Xcc-8004.137.1 at 125.427 kb on - strand, within Xcc-8004.137.1 at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.611 kb on - strand, within Xcc-8004.138.1 at 125.732 kb on - strand, within Xcc-8004.138.1 at 125.751 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 126.010 kb on + strand at 126.010 kb on + strand at 126.010 kb on + strand at 126.011 kb on - strand at 126.011 kb on - strand at 126.011 kb on - strand at 126.011 kb on - strand at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.376 kb on + strand, within Xcc-8004.139.1 at 126.377 kb on - strand, within Xcc-8004.139.1 at 126.377 kb on - strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.601 kb on + strand, within Xcc-8004.139.1 at 126.680 kb on - strand, within Xcc-8004.139.1 at 127.009 kb on + strand at 127.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 124,503 + -0.1 124,503 + -0.3 124,503 + -0.6 124,503 + +0.3 124,503 + +2.2 124,503 + +0.1 124,503 + -0.1 124,504 - +0.9 124,504 - +0.1 124,504 - +0.2 124,504 - -0.3 124,644 + +0.1 124,644 + -0.3 124,644 + +2.2 124,644 + +0.3 124,644 + -0.7 124,645 - -1.5 124,645 - -0.1 124,645 - -2.1 124,645 - +0.5 124,695 + Xcc-8004.136.1 0.12 -0.8 124,710 + Xcc-8004.136.1 0.16 -0.5 124,711 - Xcc-8004.136.1 0.17 -0.4 124,711 - Xcc-8004.136.1 0.17 -0.9 124,711 - Xcc-8004.136.1 0.17 -0.1 124,711 - Xcc-8004.136.1 0.17 -0.9 124,862 + Xcc-8004.136.1 0.55 -1.0 124,862 + Xcc-8004.136.1 0.55 -0.7 124,863 - Xcc-8004.136.1 0.55 -0.1 124,863 - Xcc-8004.136.1 0.55 +1.8 124,864 + Xcc-8004.136.1 0.55 +0.8 124,865 - Xcc-8004.136.1 0.56 +1.6 124,865 - Xcc-8004.136.1 0.56 +0.1 124,886 + Xcc-8004.136.1 0.61 -0.2 125,037 - +0.3 125,037 - +0.2 125,037 - +1.0 125,064 + -0.5 125,065 - -0.3 125,065 - -0.1 125,088 + +0.4 125,088 + -1.0 125,089 - -0.2 125,089 - -1.1 125,089 - +0.6 125,207 + -0.3 125,208 - +0.4 125,208 - -0.1 125,208 - -0.2 125,239 + -0.8 125,239 + -0.4 125,239 + +0.1 125,240 - +0.0 125,252 + +0.4 125,252 + -1.5 125,253 - -1.6 125,339 + -1.1 125,339 + -0.2 125,370 + Xcc-8004.137.1 0.20 -0.3 125,370 + Xcc-8004.137.1 0.20 -1.4 125,426 + Xcc-8004.137.1 0.54 -0.3 125,426 + Xcc-8004.137.1 0.54 -0.5 125,427 - Xcc-8004.137.1 0.55 -0.9 125,427 - Xcc-8004.137.1 0.55 -0.2 125,502 + +0.1 125,502 + +0.3 125,502 + +0.4 125,502 + +0.3 125,502 + -0.0 125,502 + -0.1 125,502 + +1.4 125,502 + -3.0 125,502 + +0.2 125,502 + +0.4 125,502 + -0.9 125,502 + -1.7 125,502 + -0.5 125,502 + +0.3 125,502 + -0.1 125,502 + -1.3 125,503 - -0.1 125,503 - -0.7 125,503 - +0.4 125,503 - +0.2 125,503 - +0.7 125,503 - -0.0 125,503 - +0.0 125,503 - +0.7 125,503 - +1.6 125,503 - -0.8 125,503 - +0.6 125,503 - +0.2 125,503 - -0.5 125,611 - Xcc-8004.138.1 0.21 -0.7 125,732 - Xcc-8004.138.1 0.43 +1.9 125,751 + Xcc-8004.138.1 0.46 -0.9 125,777 + Xcc-8004.138.1 0.51 -0.2 125,777 + Xcc-8004.138.1 0.51 -1.3 125,777 + Xcc-8004.138.1 0.51 +0.2 125,777 + Xcc-8004.138.1 0.51 -2.5 125,778 - Xcc-8004.138.1 0.51 -0.7 125,778 - Xcc-8004.138.1 0.51 -0.8 125,778 - Xcc-8004.138.1 0.51 -0.8 125,778 - Xcc-8004.138.1 0.51 +2.2 125,778 - Xcc-8004.138.1 0.51 +0.7 125,846 + Xcc-8004.138.1 0.63 -2.3 125,846 + Xcc-8004.138.1 0.63 -0.1 125,846 + Xcc-8004.138.1 0.63 -0.4 125,846 + Xcc-8004.138.1 0.63 -0.1 125,846 + Xcc-8004.138.1 0.63 -0.5 125,846 + Xcc-8004.138.1 0.63 -0.2 125,847 - Xcc-8004.138.1 0.64 -1.0 125,847 - Xcc-8004.138.1 0.64 +0.9 125,847 - Xcc-8004.138.1 0.64 -1.3 125,847 - Xcc-8004.138.1 0.64 +0.3 126,010 + +0.8 126,010 + -0.3 126,010 + -0.5 126,011 - +0.3 126,011 - -0.8 126,011 - +0.9 126,011 - +0.1 126,259 + Xcc-8004.139.1 0.23 +0.3 126,259 + Xcc-8004.139.1 0.23 -1.5 126,259 + Xcc-8004.139.1 0.23 -0.3 126,259 + Xcc-8004.139.1 0.23 -0.7 126,259 + Xcc-8004.139.1 0.23 +0.2 126,259 + Xcc-8004.139.1 0.23 -0.5 126,259 + Xcc-8004.139.1 0.23 -0.5 126,259 + Xcc-8004.139.1 0.23 +0.3 126,259 + Xcc-8004.139.1 0.23 -0.8 126,259 + Xcc-8004.139.1 0.23 -0.5 126,259 + Xcc-8004.139.1 0.23 -1.6 126,259 + Xcc-8004.139.1 0.23 +0.7 126,259 + Xcc-8004.139.1 0.23 -1.3 126,260 - Xcc-8004.139.1 0.23 -0.2 126,260 - Xcc-8004.139.1 0.23 +1.4 126,260 - Xcc-8004.139.1 0.23 +0.6 126,260 - Xcc-8004.139.1 0.23 -0.3 126,260 - Xcc-8004.139.1 0.23 -0.1 126,260 - Xcc-8004.139.1 0.23 +0.1 126,260 - Xcc-8004.139.1 0.23 -1.5 126,260 - Xcc-8004.139.1 0.23 +0.1 126,260 - Xcc-8004.139.1 0.23 +1.2 126,260 - Xcc-8004.139.1 0.23 -0.9 126,260 - Xcc-8004.139.1 0.23 +0.2 126,260 - Xcc-8004.139.1 0.23 +0.4 126,260 - Xcc-8004.139.1 0.23 +0.7 126,260 - Xcc-8004.139.1 0.23 +0.6 126,376 + Xcc-8004.139.1 0.35 +0.0 126,377 - Xcc-8004.139.1 0.35 -0.2 126,377 - Xcc-8004.139.1 0.35 -0.4 126,412 + Xcc-8004.139.1 0.39 +0.9 126,412 + Xcc-8004.139.1 0.39 -0.0 126,412 + Xcc-8004.139.1 0.39 -0.3 126,412 + Xcc-8004.139.1 0.39 +0.6 126,412 + Xcc-8004.139.1 0.39 +2.3 126,412 + Xcc-8004.139.1 0.39 -0.4 126,413 - Xcc-8004.139.1 0.39 -0.9 126,413 - Xcc-8004.139.1 0.39 +0.3 126,413 - Xcc-8004.139.1 0.39 +0.2 126,413 - Xcc-8004.139.1 0.39 -0.3 126,413 - Xcc-8004.139.1 0.39 +0.2 126,413 - Xcc-8004.139.1 0.39 -0.5 126,601 + Xcc-8004.139.1 0.59 +0.4 126,680 - Xcc-8004.139.1 0.67 +0.9 127,009 + +0.2 127,010 - +0.5
Or see this region's nucleotide sequence