Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF933

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF930 and GFF931 are separated by 226 nucleotidesGFF931 and GFF932 overlap by 4 nucleotidesGFF932 and GFF933 are separated by 73 nucleotidesGFF933 and GFF934 are separated by 55 nucleotides GFF930 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 107,322 to 108,257 GFF930 GFF931 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 108,484 to 108,972 GFF931 GFF932 - hypothetical protein, at 108,969 to 109,085 GFF932 GFF933 - Arginine/ornithine antiporter ArcD, at 109,159 to 110,562 GFF933 GFF934 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 110,618 to 111,622 GFF934 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1at 108.194 kb on + strandat 108.230 kb on + strandat 108.261 kb on + strandat 108.573 kb on + strand, within GFF931at 108.573 kb on + strand, within GFF931at 108.685 kb on - strand, within GFF931at 108.685 kb on - strand, within GFF931at 108.953 kb on + strandat 108.954 kb on - strandat 108.992 kb on + strand, within GFF932at 109.119 kb on + strandat 109.135 kb on + strandat 109.161 kb on - strandat 109.161 kb on - strandat 109.239 kb on - strandat 109.248 kb on - strandat 109.863 kb on + strand, within GFF933at 109.924 kb on + strand, within GFF933at 109.924 kb on + strand, within GFF933at 110.154 kb on - strand, within GFF933at 110.154 kb on - strand, within GFF933at 110.154 kb on - strand, within GFF933at 110.158 kb on - strand, within GFF933at 110.158 kb on - strand, within GFF933at 110.333 kb on + strand, within GFF933at 110.348 kb on + strand, within GFF933at 110.348 kb on + strand, within GFF933at 110.414 kb on + strand, within GFF933at 110.515 kb on - strandat 110.533 kb on - strandat 110.533 kb on - strandat 110.607 kb on - strandat 110.930 kb on - strand, within GFF934at 111.138 kb on + strand, within GFF934at 111.319 kb on - strand, within GFF934at 111.393 kb on + strand, within GFF934at 111.393 kb on + strand, within GFF934

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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108,194 + +0.1
108,230 + +0.8
108,261 + -0.1
108,573 + GFF931 0.18 +0.2
108,573 + GFF931 0.18 +0.1
108,685 - GFF931 0.41 -0.1
108,685 - GFF931 0.41 -0.0
108,953 + -0.4
108,954 - -0.2
108,992 + GFF932 0.20 +0.0
109,119 + +0.3
109,135 + -0.1
109,161 - -0.6
109,161 - +1.3
109,239 - -0.6
109,248 - -0.7
109,863 + GFF933 0.50 +0.4
109,924 + GFF933 0.54 -1.2
109,924 + GFF933 0.54 +0.2
110,154 - GFF933 0.71 -0.4
110,154 - GFF933 0.71 -0.1
110,154 - GFF933 0.71 -0.0
110,158 - GFF933 0.71 +0.5
110,158 - GFF933 0.71 +0.7
110,333 + GFF933 0.84 +0.6
110,348 + GFF933 0.85 +0.2
110,348 + GFF933 0.85 -0.2
110,414 + GFF933 0.89 -0.8
110,515 - -0.1
110,533 - -2.0
110,533 - +0.0
110,607 - +0.0
110,930 - GFF934 0.31 -0.0
111,138 + GFF934 0.52 -0.6
111,319 - GFF934 0.70 -0.6
111,393 + GFF934 0.77 +0.7
111,393 + GFF934 0.77 -0.4

Or see this region's nucleotide sequence