Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF197

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF196 and GFF197 are separated by 897 nucleotidesGFF197 and GFF198 are separated by 223 nucleotidesGFF198 and GFF199 are separated by 293 nucleotides GFF196 - Choline-sulfatase (EC 3.1.6.6), at 191,242 to 193,131 GFF196 GFF197 - Probable secreted protein, at 194,029 to 194,319 GFF197 GFF198 - Probable secreted protein, at 194,543 to 194,959 GFF198 GFF199 - probable lipoprotein, at 195,253 to 195,483 GFF199 Position (kb) 194 195Strain fitness (log2 ratio) -2 -1 0 1at 193.495 kb on - strandat 193.710 kb on + strandat 193.823 kb on + strandat 193.827 kb on + strandat 193.967 kb on - strandat 194.058 kb on - strand, within GFF197at 194.058 kb on - strand, within GFF197at 194.240 kb on - strand, within GFF197at 194.358 kb on + strandat 194.362 kb on - strandat 194.388 kb on + strandat 194.533 kb on - strandat 194.653 kb on - strand, within GFF198at 194.663 kb on - strand, within GFF198at 194.743 kb on - strand, within GFF198at 194.841 kb on + strand, within GFF198at 194.997 kb on + strandat 195.139 kb on - strandat 195.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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193,495 - -0.7
193,710 + +0.0
193,823 + +0.6
193,827 + +0.1
193,967 - -1.0
194,058 - GFF197 0.10 -0.1
194,058 - GFF197 0.10 -0.6
194,240 - GFF197 0.73 -1.9
194,358 + +0.1
194,362 - -0.0
194,388 + -0.4
194,533 - -0.0
194,653 - GFF198 0.26 +1.7
194,663 - GFF198 0.29 -0.7
194,743 - GFF198 0.48 +0.1
194,841 + GFF198 0.71 -0.2
194,997 + +0.5
195,139 - -0.9
195,236 - -0.4

Or see this region's nucleotide sequence