Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16490 and AO353_16495 are separated by 54 nucleotides AO353_16495 and AO353_16500 are separated by 74 nucleotides
AO353_16490: AO353_16490 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,660,653 to 3,661,843
_16490
AO353_16495: AO353_16495 - zinc metallopeptidase RseP, at 3,661,898 to 3,663,250
_16495
AO353_16500: AO353_16500 - outer membrane protein assembly factor BamA, at 3,663,325 to 3,665,724
_16500
Position (kb)
3661
3662
3663
3664 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3661.842 kb on - strand at 3661.878 kb on + strand at 3661.879 kb on - strand at 3661.895 kb on + strand at 3661.895 kb on + strand at 3661.895 kb on + strand at 3661.895 kb on + strand at 3661.896 kb on - strand at 3661.896 kb on - strand at 3661.896 kb on - strand at 3661.896 kb on - strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.910 kb on + strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.911 kb on - strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.912 kb on + strand at 3661.913 kb on - strand at 3661.913 kb on - strand at 3661.913 kb on - strand at 3662.099 kb on + strand, within AO353_16495 at 3662.099 kb on + strand, within AO353_16495 at 3662.196 kb on + strand, within AO353_16495 at 3662.196 kb on + strand, within AO353_16495 at 3662.197 kb on - strand, within AO353_16495 at 3662.197 kb on - strand, within AO353_16495 at 3662.197 kb on - strand, within AO353_16495 at 3662.209 kb on + strand, within AO353_16495 at 3662.706 kb on - strand, within AO353_16495 at 3662.722 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.787 kb on + strand, within AO353_16495 at 3662.788 kb on - strand, within AO353_16495 at 3662.798 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.050 kb on + strand, within AO353_16495 at 3663.058 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.061 kb on + strand, within AO353_16495 at 3663.122 kb on + strand at 3663.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 3,661,842 - +0.4 3,661,878 + +0.2 3,661,879 - -1.9 3,661,895 + -0.7 3,661,895 + +0.4 3,661,895 + -1.7 3,661,895 + +0.7 3,661,896 - -1.9 3,661,896 - +0.6 3,661,896 - -0.6 3,661,896 - -0.8 3,661,910 + +0.7 3,661,910 + -0.0 3,661,910 + +0.5 3,661,910 + -0.5 3,661,910 + +0.0 3,661,910 + +2.0 3,661,911 - +1.4 3,661,911 - -2.2 3,661,911 - -0.1 3,661,911 - -0.1 3,661,911 - +0.0 3,661,911 - +0.7 3,661,911 - +1.2 3,661,912 + -0.3 3,661,912 + -1.2 3,661,912 + +0.0 3,661,912 + -0.6 3,661,912 + +1.0 3,661,912 + -0.6 3,661,912 + +1.5 3,661,912 + -2.3 3,661,913 - +0.6 3,661,913 - +1.0 3,661,913 - +0.3 3,662,099 + AO353_16495 0.15 +1.0 3,662,099 + AO353_16495 0.15 +0.2 3,662,196 + AO353_16495 0.22 -1.3 3,662,196 + AO353_16495 0.22 +0.1 3,662,197 - AO353_16495 0.22 -0.5 3,662,197 - AO353_16495 0.22 -0.0 3,662,197 - AO353_16495 0.22 -0.3 3,662,209 + AO353_16495 0.23 +1.9 3,662,706 - AO353_16495 0.60 +0.5 3,662,722 + AO353_16495 0.61 -2.5 3,662,787 + AO353_16495 0.66 -0.9 3,662,787 + AO353_16495 0.66 -1.3 3,662,787 + AO353_16495 0.66 -1.3 3,662,787 + AO353_16495 0.66 +0.2 3,662,788 - AO353_16495 0.66 -1.9 3,662,798 + AO353_16495 0.67 +0.7 3,663,050 + AO353_16495 0.85 -0.4 3,663,050 + AO353_16495 0.85 -0.7 3,663,050 + AO353_16495 0.85 +1.7 3,663,050 + AO353_16495 0.85 -1.7 3,663,058 + AO353_16495 0.86 -2.8 3,663,061 + AO353_16495 0.86 -1.6 3,663,061 + AO353_16495 0.86 -1.4 3,663,061 + AO353_16495 0.86 -1.5 3,663,061 + AO353_16495 0.86 -1.4 3,663,061 + AO353_16495 0.86 -1.4 3,663,122 + -0.0 3,663,122 + -1.8
Or see this region's nucleotide sequence