Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3186

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3185 and DvMF_3186 overlap by 8 nucleotidesDvMF_3186 and DvMF_3187 are separated by 533 nucleotides DvMF_3185: DvMF_3185 - phosphate transporter (RefSeq), at 4,016,345 to 4,017,355 _3185 DvMF_3186: DvMF_3186 - protein of unknown function DUF47 (RefSeq), at 4,017,348 to 4,017,977 _3186 DvMF_3187: DvMF_3187 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 4,018,511 to 4,019,044 _3187 Position (kb) 4017 4018Strain fitness (log2 ratio) -2 -1 0 1at 4016.490 kb on - strand, within DvMF_3185at 4016.687 kb on - strand, within DvMF_3185at 4016.687 kb on - strand, within DvMF_3185at 4016.984 kb on + strand, within DvMF_3185at 4016.993 kb on + strand, within DvMF_3185at 4017.041 kb on + strand, within DvMF_3185at 4017.092 kb on - strand, within DvMF_3185at 4017.538 kb on + strand, within DvMF_3186at 4017.547 kb on + strand, within DvMF_3186at 4017.547 kb on + strand, within DvMF_3186at 4017.586 kb on + strand, within DvMF_3186at 4017.747 kb on - strand, within DvMF_3186at 4017.966 kb on + strandat 4017.966 kb on + strandat 4017.974 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
4,016,490 - DvMF_3185 0.14 -0.7
4,016,687 - DvMF_3185 0.34 -2.1
4,016,687 - DvMF_3185 0.34 +0.4
4,016,984 + DvMF_3185 0.63 +0.4
4,016,993 + DvMF_3185 0.64 -1.6
4,017,041 + DvMF_3185 0.69 +0.4
4,017,092 - DvMF_3185 0.74 -1.4
4,017,538 + DvMF_3186 0.30 -0.8
4,017,547 + DvMF_3186 0.32 -1.2
4,017,547 + DvMF_3186 0.32 -0.9
4,017,586 + DvMF_3186 0.38 -1.0
4,017,747 - DvMF_3186 0.63 +0.1
4,017,966 + -1.1
4,017,966 + -0.6
4,017,974 - -0.1

Or see this region's nucleotide sequence