Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2689

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2687 and DvMF_2688 are separated by 9 nucleotidesDvMF_2688 and DvMF_2689 are separated by 12 nucleotidesDvMF_2689 and DvMF_2690 are separated by 12 nucleotidesDvMF_2690 and DvMF_2691 are separated by 165 nucleotides DvMF_2687: DvMF_2687 - Polysulphide reductase NrfD (RefSeq), at 3,399,310 to 3,400,563 _2687 DvMF_2688: DvMF_2688 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,400,573 to 3,401,340 _2688 DvMF_2689: DvMF_2689 - molybdopterin oxidoreductase (RefSeq), at 3,401,353 to 3,403,428 _2689 DvMF_2690: DvMF_2690 - hypothetical protein (RefSeq), at 3,403,441 to 3,404,076 _2690 DvMF_2691: DvMF_2691 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 3,404,242 to 3,405,747 _2691 Position (kb) 3401 3402 3403 3404Strain fitness (log2 ratio) -2 -1 0 1at 3400.412 kb on - strand, within DvMF_2687at 3400.585 kb on - strandat 3400.585 kb on - strandat 3400.661 kb on + strand, within DvMF_2688at 3400.661 kb on + strand, within DvMF_2688at 3401.351 kb on + strandat 3401.532 kb on + strandat 3402.184 kb on - strand, within DvMF_2689at 3402.306 kb on - strand, within DvMF_2689at 3402.466 kb on + strand, within DvMF_2689at 3402.688 kb on + strand, within DvMF_2689at 3402.696 kb on - strand, within DvMF_2689at 3403.857 kb on + strand, within DvMF_2690at 3403.865 kb on - strand, within DvMF_2690at 3404.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,400,412 - DvMF_2687 0.88 +0.4
3,400,585 - -0.4
3,400,585 - -0.1
3,400,661 + DvMF_2688 0.11 -0.0
3,400,661 + DvMF_2688 0.11 -0.9
3,401,351 + -0.9
3,401,532 + +0.2
3,402,184 - DvMF_2689 0.40 -1.6
3,402,306 - DvMF_2689 0.46 -0.5
3,402,466 + DvMF_2689 0.54 -1.3
3,402,688 + DvMF_2689 0.64 -0.9
3,402,696 - DvMF_2689 0.65 -2.5
3,403,857 + DvMF_2690 0.65 +0.2
3,403,865 - DvMF_2690 0.67 -1.2
3,404,086 - -0.9

Or see this region's nucleotide sequence