Experiment: acetate 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_377 and Pf6N2E2_378 are separated by 486 nucleotides Pf6N2E2_378 and Pf6N2E2_379 are separated by 161 nucleotides Pf6N2E2_379 and Pf6N2E2_380 are separated by 214 nucleotides
Pf6N2E2_377 - hypothetical protein, at 444,748 to 444,948
_377
Pf6N2E2_378 - hypothetical protein, at 445,435 to 445,587
_378
Pf6N2E2_379 - hypothetical protein, at 445,749 to 446,549
_379
Pf6N2E2_380 - putative ABC transporter, periplasmic substrate-binding protein, at 446,764 to 447,513
_380
Position (kb) 445
446
447 Strain fitness (log2 ratio) -1
0
1 at 444.809 kb on + strand, within Pf6N2E2_377 at 444.809 kb on + strand, within Pf6N2E2_377 at 444.809 kb on + strand, within Pf6N2E2_377 at 444.922 kb on + strand, within Pf6N2E2_377 at 445.204 kb on + strand at 445.205 kb on - strand at 445.238 kb on + strand at 445.270 kb on - strand at 445.270 kb on - strand at 445.423 kb on + strand at 445.423 kb on + strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.424 kb on - strand at 445.716 kb on - strand at 445.750 kb on + strand at 445.750 kb on + strand at 445.750 kb on + strand at 445.751 kb on - strand at 445.751 kb on - strand at 445.753 kb on + strand at 445.754 kb on - strand at 446.338 kb on + strand, within Pf6N2E2_379 at 446.338 kb on + strand, within Pf6N2E2_379 at 446.339 kb on - strand, within Pf6N2E2_379 at 446.339 kb on - strand, within Pf6N2E2_379 at 446.339 kb on - strand, within Pf6N2E2_379 at 446.339 kb on - strand, within Pf6N2E2_379 at 446.342 kb on + strand, within Pf6N2E2_379 at 446.343 kb on - strand, within Pf6N2E2_379 at 446.395 kb on + strand, within Pf6N2E2_379 at 446.395 kb on + strand, within Pf6N2E2_379 at 446.395 kb on + strand, within Pf6N2E2_379 at 446.395 kb on + strand, within Pf6N2E2_379 at 446.396 kb on - strand, within Pf6N2E2_379 at 446.396 kb on - strand, within Pf6N2E2_379 at 446.413 kb on + strand, within Pf6N2E2_379 at 446.413 kb on + strand, within Pf6N2E2_379 at 446.413 kb on + strand, within Pf6N2E2_379 at 446.413 kb on + strand, within Pf6N2E2_379 at 446.414 kb on - strand, within Pf6N2E2_379 at 446.414 kb on - strand, within Pf6N2E2_379 at 446.694 kb on + strand at 446.694 kb on + strand at 446.695 kb on - strand at 446.700 kb on + strand at 446.801 kb on + strand at 446.802 kb on - strand at 446.837 kb on - strand at 446.866 kb on + strand, within Pf6N2E2_380 at 446.867 kb on - strand, within Pf6N2E2_380 at 446.867 kb on - strand, within Pf6N2E2_380 at 446.873 kb on - strand, within Pf6N2E2_380 at 446.873 kb on - strand, within Pf6N2E2_380 at 446.970 kb on + strand, within Pf6N2E2_380 at 447.016 kb on + strand, within Pf6N2E2_380 at 447.016 kb on + strand, within Pf6N2E2_380 at 447.016 kb on + strand, within Pf6N2E2_380 at 447.017 kb on - strand, within Pf6N2E2_380 at 447.052 kb on + strand, within Pf6N2E2_380 at 447.052 kb on + strand, within Pf6N2E2_380 at 447.052 kb on + strand, within Pf6N2E2_380 at 447.053 kb on - strand, within Pf6N2E2_380 at 447.311 kb on - strand, within Pf6N2E2_380 at 447.314 kb on - strand, within Pf6N2E2_380 at 447.314 kb on - strand, within Pf6N2E2_380 at 447.371 kb on - strand, within Pf6N2E2_380 at 447.371 kb on - strand, within Pf6N2E2_380 at 447.371 kb on - strand, within Pf6N2E2_380 at 447.385 kb on + strand, within Pf6N2E2_380 at 447.385 kb on + strand, within Pf6N2E2_380 at 447.386 kb on - strand, within Pf6N2E2_380 at 447.386 kb on - strand, within Pf6N2E2_380
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 80 mM remove 444,809 + Pf6N2E2_377 0.30 -0.4 444,809 + Pf6N2E2_377 0.30 +0.9 444,809 + Pf6N2E2_377 0.30 -0.5 444,922 + Pf6N2E2_377 0.87 -0.4 445,204 + +0.3 445,205 - -0.1 445,238 + +0.4 445,270 - +0.7 445,270 - -0.3 445,423 + +1.0 445,423 + +0.3 445,424 - -0.3 445,424 - +0.2 445,424 - +0.9 445,424 - -1.0 445,424 - +0.3 445,716 - -1.3 445,750 + +0.3 445,750 + +0.6 445,750 + -0.4 445,751 - +0.0 445,751 - +0.5 445,753 + +0.0 445,754 - +0.5 446,338 + Pf6N2E2_379 0.74 +0.6 446,338 + Pf6N2E2_379 0.74 +0.6 446,339 - Pf6N2E2_379 0.74 +0.0 446,339 - Pf6N2E2_379 0.74 +0.7 446,339 - Pf6N2E2_379 0.74 +0.2 446,339 - Pf6N2E2_379 0.74 -0.5 446,342 + Pf6N2E2_379 0.74 +0.7 446,343 - Pf6N2E2_379 0.74 -0.6 446,395 + Pf6N2E2_379 0.81 +0.3 446,395 + Pf6N2E2_379 0.81 +0.4 446,395 + Pf6N2E2_379 0.81 +0.6 446,395 + Pf6N2E2_379 0.81 +0.4 446,396 - Pf6N2E2_379 0.81 +0.4 446,396 - Pf6N2E2_379 0.81 -0.3 446,413 + Pf6N2E2_379 0.83 +0.3 446,413 + Pf6N2E2_379 0.83 +0.4 446,413 + Pf6N2E2_379 0.83 +1.3 446,413 + Pf6N2E2_379 0.83 -0.4 446,414 - Pf6N2E2_379 0.83 +0.4 446,414 - Pf6N2E2_379 0.83 +1.0 446,694 + -0.1 446,694 + -1.0 446,695 - -0.1 446,700 + +0.2 446,801 + +0.2 446,802 - +1.0 446,837 - +0.9 446,866 + Pf6N2E2_380 0.14 -0.1 446,867 - Pf6N2E2_380 0.14 +0.1 446,867 - Pf6N2E2_380 0.14 +0.3 446,873 - Pf6N2E2_380 0.15 -0.6 446,873 - Pf6N2E2_380 0.15 -0.1 446,970 + Pf6N2E2_380 0.27 +0.1 447,016 + Pf6N2E2_380 0.34 +0.4 447,016 + Pf6N2E2_380 0.34 -0.1 447,016 + Pf6N2E2_380 0.34 +0.7 447,017 - Pf6N2E2_380 0.34 -1.0 447,052 + Pf6N2E2_380 0.38 -0.1 447,052 + Pf6N2E2_380 0.38 -0.2 447,052 + Pf6N2E2_380 0.38 -1.2 447,053 - Pf6N2E2_380 0.39 -0.4 447,311 - Pf6N2E2_380 0.73 +0.1 447,314 - Pf6N2E2_380 0.73 -0.1 447,314 - Pf6N2E2_380 0.73 -0.1 447,371 - Pf6N2E2_380 0.81 +0.5 447,371 - Pf6N2E2_380 0.81 +0.4 447,371 - Pf6N2E2_380 0.81 +0.1 447,385 + Pf6N2E2_380 0.83 -0.9 447,385 + Pf6N2E2_380 0.83 +0.3 447,386 - Pf6N2E2_380 0.83 -1.5 447,386 - Pf6N2E2_380 0.83 +0.3
Or see this region's nucleotide sequence