Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaK and DvMF_2836 are separated by 41 nucleotides DvMF_2836 and DvMF_2837 are separated by 24 nucleotides DvMF_2837 and gatA are separated by 377 nucleotides
DvMF_2835: dnaK - molecular chaperone DnaK (RefSeq), at 3,580,091 to 3,582,010
dnaK
DvMF_2836: DvMF_2836 - hypothetical protein (RefSeq), at 3,582,052 to 3,584,379
_2836
DvMF_2837: DvMF_2837 - glutamyl-tRNA(Gln) amidotransferase, C subunit (RefSeq), at 3,584,404 to 3,584,691
_2837
DvMF_2838: gatA - aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq), at 3,585,069 to 3,586,574
gatA
Position (kb)
3582
3583
3584
3585 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3582.044 kb on + strand at 3582.062 kb on - strand at 3582.329 kb on - strand, within DvMF_2836 at 3582.343 kb on - strand, within DvMF_2836 at 3582.388 kb on + strand, within DvMF_2836 at 3582.561 kb on + strand, within DvMF_2836 at 3582.731 kb on - strand, within DvMF_2836 at 3583.260 kb on + strand, within DvMF_2836 at 3583.608 kb on - strand, within DvMF_2836 at 3583.744 kb on + strand, within DvMF_2836 at 3584.045 kb on + strand, within DvMF_2836 at 3584.284 kb on + strand at 3584.396 kb on - strand at 3585.026 kb on + strand at 3585.052 kb on - strand at 3585.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,582,044 + +0.2 3,582,062 - -0.1 3,582,329 - DvMF_2836 0.12 -0.6 3,582,343 - DvMF_2836 0.12 -0.4 3,582,388 + DvMF_2836 0.14 -3.1 3,582,561 + DvMF_2836 0.22 -2.4 3,582,731 - DvMF_2836 0.29 -1.5 3,583,260 + DvMF_2836 0.52 -1.9 3,583,608 - DvMF_2836 0.67 -1.5 3,583,744 + DvMF_2836 0.73 -2.9 3,584,045 + DvMF_2836 0.86 -0.9 3,584,284 + -1.4 3,584,396 - -0.2 3,585,026 + -0.6 3,585,052 - -0.7 3,585,054 + -0.9
Or see this region's nucleotide sequence