Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2491 and DvMF_2492 are separated by 95 nucleotides DvMF_2492 and DvMF_2493 are separated by 36 nucleotides DvMF_2493 and DvMF_2494 are separated by 37 nucleotides DvMF_2494 and DvMF_2495 are separated by 223 nucleotides DvMF_2495 and DvMF_2496 are separated by 116 nucleotides
DvMF_2491: DvMF_2491 - purine or other phosphorylase family 1 (RefSeq), at 3,145,360 to 3,146,079
_2491
DvMF_2492: DvMF_2492 - hypothetical protein (RefSeq), at 3,146,175 to 3,146,324
_2492
DvMF_2493: DvMF_2493 - hypothetical protein (RefSeq), at 3,146,361 to 3,146,591
_2493
DvMF_2494: DvMF_2494 - nucleotide sugar dehydrogenase (RefSeq), at 3,146,629 to 3,147,945
_2494
DvMF_2495: DvMF_2495 - hypothetical protein (RefSeq), at 3,148,169 to 3,148,375
_2495
DvMF_2496: DvMF_2496 - ubiquinone/menaquinone biosynthesis methyltransferase (RefSeq), at 3,148,492 to 3,149,670
_2496
Position (kb)
3146
3147
3148 Strain fitness (log2 ratio)
-1
0
1 at 3146.172 kb on - strand at 3146.223 kb on + strand, within DvMF_2492 at 3146.626 kb on + strand at 3146.941 kb on - strand, within DvMF_2494 at 3146.985 kb on + strand, within DvMF_2494 at 3147.335 kb on - strand, within DvMF_2494 at 3147.443 kb on + strand, within DvMF_2494 at 3147.622 kb on + strand, within DvMF_2494 at 3147.651 kb on - strand, within DvMF_2494 at 3147.656 kb on - strand, within DvMF_2494 at 3148.187 kb on + strand at 3148.187 kb on + strand at 3148.562 kb on + strand at 3148.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,146,172 - +0.2 3,146,223 + DvMF_2492 0.32 -0.4 3,146,626 + -0.2 3,146,941 - DvMF_2494 0.24 -0.5 3,146,985 + DvMF_2494 0.27 -1.5 3,147,335 - DvMF_2494 0.54 +1.1 3,147,443 + DvMF_2494 0.62 +0.1 3,147,622 + DvMF_2494 0.75 +0.1 3,147,651 - DvMF_2494 0.78 -0.9 3,147,656 - DvMF_2494 0.78 -0.9 3,148,187 + -0.7 3,148,187 + -0.4 3,148,562 + -0.3 3,148,589 - -0.1
Or see this region's nucleotide sequence