Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_488

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_486 and PfGW456L13_487 are separated by 68 nucleotidesPfGW456L13_487 and PfGW456L13_488 are separated by 266 nucleotidesPfGW456L13_488 and PfGW456L13_489 overlap by 4 nucleotidesPfGW456L13_489 and PfGW456L13_490 are separated by 127 nucleotides PfGW456L13_486 - Sulfate and thiosulfate binding protein CysP, at 556,774 to 557,787 _486 PfGW456L13_487 - FIG00956018: hypothetical protein, at 557,856 to 558,038 _487 PfGW456L13_488 - Mobile element protein, at 558,305 to 558,610 _488 PfGW456L13_489 - Mobile element protein, at 558,607 to 559,443 _489 PfGW456L13_490 - GGDEF domain protein, at 559,571 to 561,490 _490 Position (kb) 558 559Strain fitness (log2 ratio) -2 -1 0 1at 557.394 kb on + strand, within PfGW456L13_486at 557.395 kb on - strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.435 kb on + strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.436 kb on - strand, within PfGW456L13_486at 557.660 kb on + strand, within PfGW456L13_486at 557.660 kb on + strand, within PfGW456L13_486at 557.660 kb on + strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.661 kb on - strand, within PfGW456L13_486at 557.669 kb on + strand, within PfGW456L13_486at 557.669 kb on + strand, within PfGW456L13_486at 557.670 kb on - strand, within PfGW456L13_486at 557.670 kb on - strand, within PfGW456L13_486at 557.670 kb on - strand, within PfGW456L13_486at 557.690 kb on + strandat 557.691 kb on - strandat 557.711 kb on + strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.712 kb on - strandat 557.829 kb on - strandat 557.829 kb on - strandat 558.021 kb on - strandat 558.038 kb on + strandat 558.038 kb on + strandat 558.039 kb on - strandat 558.039 kb on - strandat 558.039 kb on - strandat 558.103 kb on + strandat 558.103 kb on + strandat 558.103 kb on + strandat 558.104 kb on - strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.106 kb on + strandat 558.107 kb on - strandat 558.107 kb on - strandat 558.107 kb on - strandat 558.107 kb on - strandat 558.251 kb on - strandat 559.467 kb on + strandat 559.467 kb on + strandat 559.529 kb on - strandat 559.572 kb on + strandat 559.573 kb on - strandat 559.573 kb on - strandat 559.573 kb on - strandat 559.573 kb on - strandat 559.573 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
557,394 + PfGW456L13_486 0.61 +0.1
557,395 - PfGW456L13_486 0.61 -1.1
557,435 + PfGW456L13_486 0.65 +1.1
557,435 + PfGW456L13_486 0.65 +1.1
557,435 + PfGW456L13_486 0.65 +0.7
557,435 + PfGW456L13_486 0.65 -0.1
557,436 - PfGW456L13_486 0.65 -1.1
557,436 - PfGW456L13_486 0.65 -1.3
557,436 - PfGW456L13_486 0.65 -0.7
557,436 - PfGW456L13_486 0.65 +0.4
557,660 + PfGW456L13_486 0.87 -0.5
557,660 + PfGW456L13_486 0.87 +0.7
557,660 + PfGW456L13_486 0.87 +0.3
557,661 - PfGW456L13_486 0.87 -0.3
557,661 - PfGW456L13_486 0.87 +0.0
557,661 - PfGW456L13_486 0.87 +0.2
557,661 - PfGW456L13_486 0.87 -0.3
557,661 - PfGW456L13_486 0.87 +0.1
557,661 - PfGW456L13_486 0.87 -0.6
557,661 - PfGW456L13_486 0.87 +0.6
557,669 + PfGW456L13_486 0.88 +0.0
557,669 + PfGW456L13_486 0.88 -0.1
557,670 - PfGW456L13_486 0.88 -0.3
557,670 - PfGW456L13_486 0.88 -0.8
557,670 - PfGW456L13_486 0.88 +0.3
557,690 + -0.4
557,691 - +0.9
557,711 + +1.0
557,712 - +0.5
557,712 - +0.4
557,712 - -0.9
557,712 - +0.2
557,712 - -0.6
557,829 - +0.6
557,829 - -0.2
558,021 - -1.2
558,038 + +1.7
558,038 + -1.2
558,039 - -0.6
558,039 - +0.2
558,039 - -0.3
558,103 + +1.2
558,103 + -2.0
558,103 + +1.4
558,104 - -0.9
558,106 + -0.3
558,106 + +1.7
558,106 + -1.7
558,106 + +0.8
558,106 + -1.6
558,106 + +0.1
558,106 + +0.8
558,106 + +0.2
558,107 - +0.3
558,107 - -0.6
558,107 - -1.5
558,107 - -0.8
558,251 - -0.5
559,467 + -0.1
559,467 + -0.2
559,529 - -0.4
559,572 + -2.3
559,573 - +0.9
559,573 - -0.1
559,573 - +1.6
559,573 - -0.1
559,573 - -0.1

Or see this region's nucleotide sequence