Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_68

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_67 and PfGW456L13_68 are separated by 792 nucleotidesPfGW456L13_68 and PfGW456L13_69 are separated by 501 nucleotides PfGW456L13_67 - Cobalamin biosynthesis protein CobG, at 77,842 to 79,113 _67 PfGW456L13_68 - hypothetical protein, at 79,906 to 80,049 _68 PfGW456L13_69 - Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-), at 80,551 to 81,399 _69 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 79.004 kb on + strandat 79.080 kb on + strandat 79.081 kb on - strandat 79.081 kb on - strandat 79.196 kb on + strandat 79.196 kb on + strandat 79.196 kb on + strandat 79.196 kb on + strandat 79.196 kb on + strandat 79.196 kb on + strandat 79.197 kb on - strandat 79.197 kb on - strandat 79.197 kb on - strandat 79.197 kb on - strandat 79.197 kb on - strandat 79.197 kb on - strandat 79.249 kb on - strandat 79.265 kb on + strandat 79.265 kb on + strandat 79.265 kb on + strandat 79.266 kb on - strandat 79.266 kb on - strandat 79.356 kb on - strandat 79.379 kb on + strandat 79.383 kb on + strandat 79.383 kb on + strandat 79.385 kb on + strandat 79.385 kb on + strandat 79.385 kb on + strandat 79.386 kb on - strandat 79.386 kb on - strandat 79.480 kb on + strandat 79.481 kb on - strandat 79.508 kb on + strandat 79.509 kb on - strandat 79.573 kb on + strandat 79.573 kb on + strandat 79.573 kb on + strandat 79.573 kb on + strandat 79.573 kb on + strandat 79.573 kb on + strandat 79.573 kb on + strandat 79.574 kb on - strandat 79.717 kb on - strandat 79.717 kb on - strandat 79.717 kb on - strandat 79.762 kb on + strandat 79.805 kb on + strandat 79.950 kb on + strand, within PfGW456L13_68at 79.967 kb on + strand, within PfGW456L13_68at 80.073 kb on - strandat 80.113 kb on - strandat 80.173 kb on + strandat 80.174 kb on - strandat 80.211 kb on - strandat 80.211 kb on - strandat 80.459 kb on + strandat 80.459 kb on + strandat 80.459 kb on + strandat 80.460 kb on - strandat 80.478 kb on + strandat 80.478 kb on + strandat 80.478 kb on + strandat 80.478 kb on + strandat 80.478 kb on + strandat 80.479 kb on - strandat 80.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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79,004 + +0.6
79,080 + -0.2
79,081 - -0.5
79,081 - -0.5
79,196 + -1.1
79,196 + -1.1
79,196 + -2.0
79,196 + +0.2
79,196 + -0.6
79,196 + -0.8
79,197 - +0.2
79,197 - +0.4
79,197 - +0.6
79,197 - +0.1
79,197 - +0.4
79,197 - +0.1
79,249 - -0.5
79,265 + +0.4
79,265 + -0.5
79,265 + +1.1
79,266 - -0.7
79,266 - +0.6
79,356 - +0.8
79,379 + -0.0
79,383 + -0.1
79,383 + -0.4
79,385 + +0.2
79,385 + -1.5
79,385 + +1.5
79,386 - +1.0
79,386 - -0.8
79,480 + +0.3
79,481 - +0.7
79,508 + +0.4
79,509 - -0.0
79,573 + -0.3
79,573 + +0.6
79,573 + -0.5
79,573 + -0.6
79,573 + +0.3
79,573 + +1.1
79,573 + +1.3
79,574 - +2.6
79,717 - +0.8
79,717 - -1.7
79,717 - -1.3
79,762 + -0.0
79,805 + +0.1
79,950 + PfGW456L13_68 0.31 -0.3
79,967 + PfGW456L13_68 0.42 -0.3
80,073 - +1.3
80,113 - +0.4
80,173 + +0.6
80,174 - -0.2
80,211 - +1.6
80,211 - +0.2
80,459 + -0.0
80,459 + -1.8
80,459 + +0.1
80,460 - -1.5
80,478 + -1.1
80,478 + +0.4
80,478 + -0.0
80,478 + -0.1
80,478 + -1.4
80,479 - -0.0
80,625 + -1.3

Or see this region's nucleotide sequence