Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.73.1 and Xcc-8004.74.1 are separated by 168 nucleotides Xcc-8004.74.1 and Xcc-8004.75.1 overlap by 115 nucleotides Xcc-8004.75.1 and Xcc-8004.76.1 are separated by 90 nucleotides Xcc-8004.76.1 and Xcc-8004.77.1 are separated by 198 nucleotides Xcc-8004.77.1 and Xcc-8004.78.1 are separated by 113 nucleotides
Xcc-8004.73.1: Xcc-8004.73.1 - putative; ORF located using Glimmer/Genemark, at 74,669 to 75,382
Xcc-8004.73.1
Xcc-8004.74.1: Xcc-8004.74.1 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 75,551 to 76,150
Xcc-8004.74.1
Xcc-8004.75.1: Xcc-8004.75.1 - hypothetical protein, at 76,036 to 76,377
Xcc-8004.75.1
Xcc-8004.76.1: Xcc-8004.76.1 - Transcriptional regulator, HxlR family, at 76,468 to 76,818
Xcc-8004.76.1
Xcc-8004.77.1: Xcc-8004.77.1 - hypothetical protein, at 77,017 to 77,220
Xcc-8004.77.1
Xcc-8004.78.1: Xcc-8004.78.1 - regulatory protein CII, at 77,334 to 78,434
Xcc-8004.78.1
Position (kb) 76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.112 kb on + strand, within Xcc-8004.73.1 at 75.203 kb on - strand, within Xcc-8004.73.1 at 75.203 kb on - strand, within Xcc-8004.73.1 at 75.203 kb on - strand, within Xcc-8004.73.1 at 75.203 kb on - strand, within Xcc-8004.73.1 at 75.222 kb on - strand, within Xcc-8004.73.1 at 75.222 kb on - strand, within Xcc-8004.73.1 at 75.222 kb on - strand, within Xcc-8004.73.1 at 75.222 kb on - strand, within Xcc-8004.73.1 at 75.222 kb on - strand, within Xcc-8004.73.1 at 75.222 kb on - strand, within Xcc-8004.73.1 at 75.242 kb on + strand, within Xcc-8004.73.1 at 75.243 kb on - strand, within Xcc-8004.73.1 at 75.243 kb on - strand, within Xcc-8004.73.1 at 75.266 kb on - strand, within Xcc-8004.73.1 at 75.335 kb on + strand at 75.386 kb on + strand at 75.386 kb on + strand at 75.386 kb on + strand at 75.386 kb on + strand at 75.386 kb on + strand at 75.387 kb on - strand at 75.387 kb on - strand at 75.387 kb on - strand at 75.387 kb on - strand at 75.387 kb on - strand at 75.391 kb on - strand at 75.415 kb on + strand at 75.553 kb on - strand at 75.601 kb on - strand at 75.601 kb on - strand at 75.715 kb on - strand, within Xcc-8004.74.1 at 75.729 kb on + strand, within Xcc-8004.74.1 at 75.729 kb on + strand, within Xcc-8004.74.1 at 75.730 kb on - strand, within Xcc-8004.74.1 at 75.767 kb on + strand, within Xcc-8004.74.1 at 75.767 kb on + strand, within Xcc-8004.74.1 at 75.767 kb on + strand, within Xcc-8004.74.1 at 75.767 kb on + strand, within Xcc-8004.74.1 at 75.767 kb on + strand, within Xcc-8004.74.1 at 75.768 kb on - strand, within Xcc-8004.74.1 at 75.768 kb on - strand, within Xcc-8004.74.1 at 75.768 kb on - strand, within Xcc-8004.74.1 at 75.838 kb on + strand, within Xcc-8004.74.1 at 75.838 kb on + strand, within Xcc-8004.74.1 at 75.838 kb on + strand, within Xcc-8004.74.1 at 75.839 kb on - strand, within Xcc-8004.74.1 at 75.888 kb on + strand, within Xcc-8004.74.1 at 75.889 kb on - strand, within Xcc-8004.74.1 at 75.889 kb on - strand, within Xcc-8004.74.1 at 75.979 kb on - strand, within Xcc-8004.74.1 at 75.979 kb on - strand, within Xcc-8004.74.1 at 76.037 kb on + strand at 76.037 kb on + strand at 76.037 kb on + strand at 76.038 kb on - strand at 76.049 kb on - strand at 76.049 kb on - strand at 76.049 kb on - strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.404 kb on + strand at 76.404 kb on + strand at 76.404 kb on + strand at 76.404 kb on + strand at 76.404 kb on + strand at 76.405 kb on - strand at 76.405 kb on - strand at 76.405 kb on - strand at 76.405 kb on - strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.455 kb on - strand at 76.589 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.676 kb on + strand, within Xcc-8004.76.1 at 76.676 kb on + strand, within Xcc-8004.76.1 at 76.677 kb on - strand, within Xcc-8004.76.1 at 76.677 kb on - strand, within Xcc-8004.76.1 at 76.677 kb on - strand, within Xcc-8004.76.1 at 76.688 kb on - strand, within Xcc-8004.76.1 at 76.688 kb on - strand, within Xcc-8004.76.1 at 76.715 kb on - strand, within Xcc-8004.76.1 at 76.715 kb on - strand, within Xcc-8004.76.1 at 76.865 kb on - strand at 76.887 kb on - strand at 76.887 kb on - strand at 76.887 kb on - strand at 76.900 kb on - strand at 76.900 kb on - strand at 76.931 kb on - strand at 76.975 kb on - strand at 76.975 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.063 kb on - strand, within Xcc-8004.77.1 at 77.063 kb on - strand, within Xcc-8004.77.1 at 77.104 kb on - strand, within Xcc-8004.77.1 at 77.107 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.166 kb on - strand, within Xcc-8004.77.1 at 77.166 kb on - strand, within Xcc-8004.77.1 at 77.181 kb on - strand, within Xcc-8004.77.1 at 77.181 kb on - strand, within Xcc-8004.77.1 at 77.186 kb on - strand, within Xcc-8004.77.1 at 77.269 kb on - strand at 77.269 kb on - strand at 77.269 kb on - strand at 77.293 kb on - strand at 77.293 kb on - strand at 77.293 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.355 kb on + strand at 77.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 75,112 + Xcc-8004.73.1 0.62 +0.4 75,203 - Xcc-8004.73.1 0.75 +0.1 75,203 - Xcc-8004.73.1 0.75 +0.3 75,203 - Xcc-8004.73.1 0.75 -0.3 75,203 - Xcc-8004.73.1 0.75 -0.1 75,222 - Xcc-8004.73.1 0.77 +0.4 75,222 - Xcc-8004.73.1 0.77 -0.7 75,222 - Xcc-8004.73.1 0.77 -0.4 75,222 - Xcc-8004.73.1 0.77 +0.3 75,222 - Xcc-8004.73.1 0.77 +0.0 75,222 - Xcc-8004.73.1 0.77 +2.0 75,242 + Xcc-8004.73.1 0.80 +0.3 75,243 - Xcc-8004.73.1 0.80 +1.0 75,243 - Xcc-8004.73.1 0.80 -0.4 75,266 - Xcc-8004.73.1 0.84 +0.2 75,335 + +0.0 75,386 + +0.2 75,386 + -0.6 75,386 + -0.1 75,386 + -0.4 75,386 + +0.2 75,387 - -0.0 75,387 - +0.3 75,387 - +0.4 75,387 - +0.7 75,387 - +2.3 75,391 - -0.6 75,415 + +1.9 75,553 - -0.0 75,601 - +0.4 75,601 - -1.7 75,715 - Xcc-8004.74.1 0.27 +1.7 75,729 + Xcc-8004.74.1 0.30 -0.0 75,729 + Xcc-8004.74.1 0.30 +0.9 75,730 - Xcc-8004.74.1 0.30 -2.2 75,767 + Xcc-8004.74.1 0.36 -2.0 75,767 + Xcc-8004.74.1 0.36 +2.5 75,767 + Xcc-8004.74.1 0.36 -0.8 75,767 + Xcc-8004.74.1 0.36 +0.7 75,767 + Xcc-8004.74.1 0.36 -1.6 75,768 - Xcc-8004.74.1 0.36 -0.0 75,768 - Xcc-8004.74.1 0.36 +0.4 75,768 - Xcc-8004.74.1 0.36 +0.9 75,838 + Xcc-8004.74.1 0.48 +0.9 75,838 + Xcc-8004.74.1 0.48 -0.3 75,838 + Xcc-8004.74.1 0.48 +0.8 75,839 - Xcc-8004.74.1 0.48 -0.4 75,888 + Xcc-8004.74.1 0.56 +1.4 75,889 - Xcc-8004.74.1 0.56 +0.1 75,889 - Xcc-8004.74.1 0.56 -0.2 75,979 - Xcc-8004.74.1 0.71 +0.7 75,979 - Xcc-8004.74.1 0.71 -0.8 76,037 + +0.3 76,037 + +0.4 76,037 + +0.4 76,038 - -2.9 76,049 - -0.6 76,049 - -0.5 76,049 - -0.1 76,150 + +1.0 76,150 + -0.1 76,150 + +0.6 76,150 + +0.9 76,150 + +0.1 76,150 + -1.3 76,151 - Xcc-8004.75.1 0.34 -1.1 76,151 - Xcc-8004.75.1 0.34 +0.2 76,151 - Xcc-8004.75.1 0.34 -2.5 76,151 - Xcc-8004.75.1 0.34 -0.7 76,151 - Xcc-8004.75.1 0.34 -0.5 76,151 - Xcc-8004.75.1 0.34 +0.0 76,151 - Xcc-8004.75.1 0.34 -0.1 76,404 + -1.4 76,404 + -0.5 76,404 + +1.5 76,404 + -0.4 76,404 + +0.5 76,405 - +1.6 76,405 - -1.3 76,405 - -0.0 76,405 - -1.1 76,454 + -1.5 76,454 + -0.3 76,454 + -1.7 76,454 + -0.6 76,454 + +1.2 76,455 - -1.2 76,589 - Xcc-8004.76.1 0.34 +0.7 76,674 - Xcc-8004.76.1 0.59 +0.5 76,674 - Xcc-8004.76.1 0.59 +2.1 76,674 - Xcc-8004.76.1 0.59 +0.5 76,674 - Xcc-8004.76.1 0.59 +0.9 76,676 + Xcc-8004.76.1 0.59 -0.1 76,676 + Xcc-8004.76.1 0.59 -1.0 76,677 - Xcc-8004.76.1 0.60 +0.5 76,677 - Xcc-8004.76.1 0.60 -0.4 76,677 - Xcc-8004.76.1 0.60 +1.0 76,688 - Xcc-8004.76.1 0.63 -1.4 76,688 - Xcc-8004.76.1 0.63 +0.3 76,715 - Xcc-8004.76.1 0.70 -0.9 76,715 - Xcc-8004.76.1 0.70 +0.8 76,865 - -1.0 76,887 - +1.3 76,887 - +0.4 76,887 - -0.5 76,900 - +0.3 76,900 - -1.0 76,931 - +0.3 76,975 - -0.4 76,975 - -0.7 77,015 - +0.9 77,015 - +0.3 77,015 - +0.3 77,015 - -1.7 77,015 - +0.4 77,015 - +1.9 77,015 - -1.3 77,015 - -0.7 77,015 - -0.1 77,015 - +0.1 77,015 - -1.6 77,015 - +0.3 77,015 - +1.9 77,015 - +2.2 77,063 - Xcc-8004.77.1 0.23 -1.4 77,063 - Xcc-8004.77.1 0.23 +1.1 77,104 - Xcc-8004.77.1 0.43 +2.3 77,107 - Xcc-8004.77.1 0.44 -0.9 77,159 - Xcc-8004.77.1 0.70 +1.2 77,159 - Xcc-8004.77.1 0.70 +1.9 77,159 - Xcc-8004.77.1 0.70 -0.8 77,159 - Xcc-8004.77.1 0.70 -0.3 77,159 - Xcc-8004.77.1 0.70 -1.7 77,159 - Xcc-8004.77.1 0.70 +0.9 77,159 - Xcc-8004.77.1 0.70 +0.1 77,159 - Xcc-8004.77.1 0.70 -1.2 77,159 - Xcc-8004.77.1 0.70 +1.1 77,159 - Xcc-8004.77.1 0.70 -0.4 77,166 - Xcc-8004.77.1 0.73 -0.6 77,166 - Xcc-8004.77.1 0.73 -0.7 77,181 - Xcc-8004.77.1 0.80 -0.6 77,181 - Xcc-8004.77.1 0.80 +0.3 77,186 - Xcc-8004.77.1 0.83 +0.0 77,269 - -0.1 77,269 - -0.8 77,269 - +2.5 77,293 - -2.6 77,293 - -0.0 77,293 - +0.6 77,317 - -1.5 77,317 - +1.0 77,317 - -0.4 77,317 - +1.9 77,317 - -1.1 77,329 - +0.3 77,329 - +1.5 77,329 - +2.2 77,329 - -1.2 77,343 - -0.5 77,343 - -0.3 77,343 - -1.0 77,355 + -0.3 77,355 + -0.7
Or see this region's nucleotide sequence