Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00280

Experiment: PYE with Nalidixic 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00278 and CCNA_00279 are separated by 51 nucleotidesCCNA_00279 and CCNA_00280 overlap by 4 nucleotidesCCNA_00280 and CCNA_00281 overlap by 1 nucleotides CCNA_00278: CCNA_00278 - glutaminase, at 291,339 to 292,259 _00278 CCNA_00279: CCNA_00279 - NAD(P)H-quinone reductase, at 292,311 to 292,901 _00279 CCNA_00280: CCNA_00280 - tRNA pseudouridine synthase A, at 292,898 to 293,641 _00280 CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567 _00281 Position (kb) 292 293 294Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 291.915 kb on - strand, within CCNA_00278at 291.922 kb on - strand, within CCNA_00278at 291.926 kb on + strand, within CCNA_00278at 291.987 kb on - strand, within CCNA_00278at 292.006 kb on - strand, within CCNA_00278at 292.017 kb on + strand, within CCNA_00278at 292.044 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.067 kb on - strand, within CCNA_00278at 292.069 kb on + strand, within CCNA_00278at 292.095 kb on + strand, within CCNA_00278at 292.109 kb on + strand, within CCNA_00278at 292.126 kb on - strand, within CCNA_00278at 292.129 kb on + strand, within CCNA_00278at 292.145 kb on + strand, within CCNA_00278at 292.259 kb on - strandat 292.264 kb on + strandat 292.269 kb on + strandat 292.298 kb on - strandat 292.326 kb on - strandat 292.373 kb on + strand, within CCNA_00279at 292.381 kb on - strand, within CCNA_00279at 292.394 kb on + strand, within CCNA_00279at 292.404 kb on - strand, within CCNA_00279at 292.431 kb on - strand, within CCNA_00279at 292.450 kb on + strand, within CCNA_00279at 292.457 kb on + strand, within CCNA_00279at 292.493 kb on + strand, within CCNA_00279at 292.494 kb on - strand, within CCNA_00279at 292.537 kb on - strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.627 kb on - strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.703 kb on + strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.761 kb on + strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.816 kb on - strand, within CCNA_00279at 292.827 kb on + strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.879 kb on + strandat 292.879 kb on + strandat 292.900 kb on + strandat 292.986 kb on + strand, within CCNA_00280at 292.987 kb on + strand, within CCNA_00280at 292.994 kb on - strand, within CCNA_00280at 292.994 kb on - strand, within CCNA_00280at 293.002 kb on - strand, within CCNA_00280at 293.004 kb on + strand, within CCNA_00280at 293.004 kb on + strand, within CCNA_00280at 293.022 kb on + strand, within CCNA_00280at 293.022 kb on + strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.051 kb on + strand, within CCNA_00280at 293.051 kb on + strand, within CCNA_00280at 293.077 kb on - strand, within CCNA_00280at 293.125 kb on + strand, within CCNA_00280at 293.128 kb on - strand, within CCNA_00280at 293.167 kb on - strand, within CCNA_00280at 293.191 kb on + strand, within CCNA_00280at 293.214 kb on - strand, within CCNA_00280at 293.229 kb on + strand, within CCNA_00280at 293.243 kb on - strand, within CCNA_00280at 293.262 kb on + strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.299 kb on - strand, within CCNA_00280at 293.299 kb on - strand, within CCNA_00280at 293.315 kb on - strand, within CCNA_00280at 293.320 kb on - strand, within CCNA_00280at 293.333 kb on - strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.348 kb on - strand, within CCNA_00280at 293.348 kb on - strandat 293.348 kb on - strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.398 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.417 kb on - strand, within CCNA_00280at 293.436 kb on + strand, within CCNA_00280at 293.438 kb on - strand, within CCNA_00280at 293.471 kb on + strand, within CCNA_00280at 293.532 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.591 kb on - strandat 293.601 kb on - strandat 293.601 kb on - strandat 293.634 kb on - strandat 293.644 kb on + strandat 293.652 kb on - strandat 293.660 kb on - strandat 293.662 kb on - strandat 293.804 kb on + strand, within CCNA_00281at 293.961 kb on + strand, within CCNA_00281at 294.289 kb on + strand, within CCNA_00281at 294.419 kb on + strand, within CCNA_00281at 294.609 kb on + strandat 294.609 kb on + strandat 294.617 kb on - strandat 294.632 kb on + strandat 294.632 kb on + strandat 294.640 kb on - strandat 294.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
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291,915 - CCNA_00278 0.63 +0.3
291,922 - CCNA_00278 0.63 -1.6
291,926 + CCNA_00278 0.64 -2.9
291,987 - CCNA_00278 0.70 -1.1
292,006 - CCNA_00278 0.72 -1.4
292,017 + CCNA_00278 0.74 +2.2
292,044 + CCNA_00278 0.77 +0.2
292,059 + CCNA_00278 0.78 +0.9
292,059 + CCNA_00278 0.78 -0.3
292,059 + CCNA_00278 0.78 +1.5
292,059 + CCNA_00278 0.78 +0.9
292,067 - CCNA_00278 0.79 -1.0
292,069 + CCNA_00278 0.79 -0.6
292,095 + CCNA_00278 0.82 -1.4
292,109 + CCNA_00278 0.84 +0.6
292,126 - CCNA_00278 0.85 +2.2
292,129 + CCNA_00278 0.86 -1.6
292,145 + CCNA_00278 0.88 +2.0
292,259 - +0.3
292,264 + -4.2
292,269 + -1.8
292,298 - -0.8
292,326 - +0.4
292,373 + CCNA_00279 0.10 +2.5
292,381 - CCNA_00279 0.12 +0.1
292,394 + CCNA_00279 0.14 -2.0
292,404 - CCNA_00279 0.16 +0.8
292,431 - CCNA_00279 0.20 -0.1
292,450 + CCNA_00279 0.24 -2.8
292,457 + CCNA_00279 0.25 -1.1
292,493 + CCNA_00279 0.31 +2.3
292,494 - CCNA_00279 0.31 +2.1
292,537 - CCNA_00279 0.38 +0.4
292,598 + CCNA_00279 0.49 -1.3
292,598 + CCNA_00279 0.49 -1.6
292,598 + CCNA_00279 0.49 +1.0
292,598 + CCNA_00279 0.49 -1.0
292,598 + CCNA_00279 0.49 +0.3
292,598 + CCNA_00279 0.49 -2.0
292,598 + CCNA_00279 0.49 +0.5
292,598 + CCNA_00279 0.49 -2.8
292,606 - CCNA_00279 0.50 +2.0
292,606 - CCNA_00279 0.50 +0.5
292,606 - CCNA_00279 0.50 -0.9
292,606 - CCNA_00279 0.50 +1.7
292,606 - CCNA_00279 0.50 -1.7
292,606 - CCNA_00279 0.50 -0.6
292,606 - CCNA_00279 0.50 -2.3
292,627 - CCNA_00279 0.53 +1.5
292,698 + CCNA_00279 0.65 -1.6
292,698 + CCNA_00279 0.65 +1.2
292,703 + CCNA_00279 0.66 -1.6
292,706 - CCNA_00279 0.67 -2.1
292,706 - CCNA_00279 0.67 -2.0
292,706 - CCNA_00279 0.67 -1.8
292,710 + CCNA_00279 0.68 -2.2
292,710 + CCNA_00279 0.68 +0.4
292,710 + CCNA_00279 0.68 -0.1
292,718 - CCNA_00279 0.69 +0.1
292,718 - CCNA_00279 0.69 +0.7
292,761 + CCNA_00279 0.76 +0.9
292,785 - CCNA_00279 0.80 +2.5
292,785 - CCNA_00279 0.80 -3.4
292,816 - CCNA_00279 0.85 -1.7
292,827 + CCNA_00279 0.87 +0.4
292,833 - CCNA_00279 0.88 -1.1
292,833 - CCNA_00279 0.88 +1.9
292,879 + +3.6
292,879 + -0.4
292,900 + -0.7
292,986 + CCNA_00280 0.12 -2.1
292,987 + CCNA_00280 0.12 -1.8
292,994 - CCNA_00280 0.13 -1.8
292,994 - CCNA_00280 0.13 -1.9
293,002 - CCNA_00280 0.14 -1.4
293,004 + CCNA_00280 0.14 -0.1
293,004 + CCNA_00280 0.14 -1.3
293,022 + CCNA_00280 0.17 +3.2
293,022 + CCNA_00280 0.17 -1.5
293,030 - CCNA_00280 0.18 -1.6
293,030 - CCNA_00280 0.18 -2.4
293,051 + CCNA_00280 0.21 -1.0
293,051 + CCNA_00280 0.21 -2.8
293,077 - CCNA_00280 0.24 -3.3
293,125 + CCNA_00280 0.31 -2.3
293,128 - CCNA_00280 0.31 -3.0
293,167 - CCNA_00280 0.36 -0.3
293,191 + CCNA_00280 0.39 -0.7
293,214 - CCNA_00280 0.42 -1.9
293,229 + CCNA_00280 0.44 -2.0
293,243 - CCNA_00280 0.46 -0.1
293,262 + CCNA_00280 0.49 -1.7
293,275 - CCNA_00280 0.51 -0.5
293,275 - CCNA_00280 0.51 -3.0
293,275 - CCNA_00280 0.51 -2.8
293,299 - CCNA_00280 0.54 -0.1
293,299 - CCNA_00280 0.54 -1.7
293,315 - CCNA_00280 0.56 -0.1
293,320 - CCNA_00280 0.57 -2.4
293,333 - CCNA_00280 0.58 -1.0
293,340 + CCNA_00280 0.59 -2.1
293,348 - CCNA_00280 0.60 -2.8
293,348 - +2.2
293,348 - CCNA_00280 0.60 -3.1
293,390 + CCNA_00280 0.66 -4.0
293,390 + CCNA_00280 0.66 -4.9
293,398 - CCNA_00280 0.67 -0.2
293,403 - CCNA_00280 0.68 -1.3
293,403 - CCNA_00280 0.68 -1.7
293,417 - CCNA_00280 0.70 -4.3
293,436 + CCNA_00280 0.72 -0.3
293,438 - CCNA_00280 0.73 -1.3
293,471 + CCNA_00280 0.77 -1.0
293,532 + +0.2
293,567 + -2.3
293,567 + -0.7
293,591 - -2.0
293,601 - -1.3
293,601 - +0.3
293,634 - -3.3
293,644 + -2.5
293,652 - +0.7
293,660 - -1.2
293,662 - +2.0
293,804 + CCNA_00281 0.18 -0.1
293,961 + CCNA_00281 0.35 +0.2
294,289 + CCNA_00281 0.70 -0.8
294,419 + CCNA_00281 0.84 -0.1
294,609 + -0.9
294,609 + -0.5
294,617 - +1.9
294,632 + +0.7
294,632 + -2.1
294,640 - +0.4
294,640 - -0.2

Or see this region's nucleotide sequence