Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00675

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
143,882	-		LRK54_RS00670	0.67	+0.7
143,882	-		LRK54_RS00670	0.67	-2.6
143,911	+		LRK54_RS00670	0.70	-0.3
143,911	+		LRK54_RS00670	0.70	-0.3
143,911	+		LRK54_RS00670	0.70	-1.3
143,912	-		LRK54_RS00670	0.70	-1.3
143,912	-		LRK54_RS00670	0.70	+0.7
143,912	-		LRK54_RS00670	0.70	-0.9
144,049	+		LRK54_RS00670	0.82	-0.3
144,050	-		LRK54_RS00670	0.82	-0.9
144,050	-		LRK54_RS00670	0.82	-1.3
144,050	-		LRK54_RS00670	0.82	-0.3
144,050	-		LRK54_RS00670	0.82	-1.6
144,050	-		LRK54_RS00670	0.82	-2.3
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	+0.7
144,052	+		LRK54_RS00670	0.82	-1.6
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	-0.3
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	-0.9
144,052	+		LRK54_RS00670	0.82	-1.6
144,053	-		LRK54_RS00670	0.83	-0.9
144,053	-		LRK54_RS00670	0.83	+0.7
144,053	-		LRK54_RS00670	0.83	-3.0
144,053	-		LRK54_RS00670	0.83	-1.3
144,053	-		LRK54_RS00670	0.83	-0.3
144,072	-		LRK54_RS00670	0.84	-0.3
144,092	-		LRK54_RS00670	0.86	-2.5
144,092	-		LRK54_RS00670	0.86	-0.3
144,092	-		LRK54_RS00670	0.86	+0.7
144,092	-		LRK54_RS00670	0.86	-1.3
144,092	-		LRK54_RS00670	0.86	-0.3
144,094	+		LRK54_RS00670	0.86	-1.6
144,117	-		LRK54_RS00670	0.88	+0.7
144,117	-		LRK54_RS00670	0.88	-1.6
144,118	+		LRK54_RS00670	0.88	+0.7
144,118	+		LRK54_RS00670	0.88	-0.9
144,118	+		LRK54_RS00670	0.88	-0.3
144,118	+		LRK54_RS00670	0.88	-1.9
144,118	+		LRK54_RS00670	0.88	+0.7
144,118	+		LRK54_RS00670	0.88	-1.6
144,119	-		LRK54_RS00670	0.88	-0.9
144,119	-		LRK54_RS00670	0.88	-1.6
144,119	-		LRK54_RS00670	0.88	-0.9
144,119	-		LRK54_RS00670	0.88	+0.7
144,133	+		LRK54_RS00670	0.90	-0.9
144,133	+		LRK54_RS00670	0.90	-2.1
144,133	+		LRK54_RS00670	0.90	+0.7
144,134	-		LRK54_RS00670	0.90	+0.7
144,134	-		LRK54_RS00670	0.90	-0.3
144,134	-		LRK54_RS00670	0.90	-0.9
144,198	+				-0.9
144,199	-				-1.6
144,199	-				-0.3
144,199	-				+0.7
144,229	+				-1.6
144,230	-				+0.7
144,230	-				-2.1
144,239	+				-1.3
144,239	+				-1.6
144,239	+				-1.3
144,240	-				-0.9
144,265	+				-0.9
144,265	+				-1.9
144,266	-				-2.4
144,266	-				-0.3
144,266	-				-1.3
144,266	-				+0.7
144,266	-				-1.3
144,266	-				-0.9
144,266	-				-2.1
144,266	-				-1.6
144,266	-				-0.9
144,266	-				+0.5
144,266	-				-0.7
144,266	-				-0.3
144,266	-				-0.6
144,266	-				-3.1
144,268	+				-0.9
144,269	-				-1.1
144,269	-				-0.1
144,269	-				-0.3
144,292	-				-0.9
144,320	+				-1.9
144,320	+				-0.3
144,320	+				+0.7
144,320	+				-1.9
144,321	-				-1.9
144,321	-				-3.0
144,321	-				-1.6
144,321	-				-2.1
144,321	-				-1.9
144,321	-				-1.9
144,321	-				-0.3
144,321	-				-2.1
144,321	-				-2.9
144,321	-				-0.6
144,321	-				+1.7
144,321	-				-0.3
144,321	-				-0.3
144,321	-				-2.8
144,321	-				-1.9
144,321	-				-1.3
144,321	-				-0.9
144,321	-				-1.6
144,321	-				+0.7
144,321	-				-0.6
144,342	-				-1.3
144,359	+				-2.6
144,360	-				-2.1
144,360	-				-0.3
144,383	-				-1.1
144,383	-				-1.6
144,383	-				-2.1
144,417	+				-1.9
144,509	+				-0.3
144,509	+				-2.6
144,509	+				-1.3
144,509	+				-1.9
144,509	+				-2.9
144,509	+				-0.3
144,509	+				-1.6
144,509	+				+0.7
144,509	+				-2.6
144,509	+				-0.9
144,509	+				-2.8
144,509	+				-0.9
144,509	+				-3.9
144,509	+				-0.9
144,509	+				-0.3
144,509	+				-2.9
144,509	+				-0.9
144,509	+				-4.1
144,509	+				-0.3
144,509	+				-2.1
144,509	+				-2.1
144,509	+				-1.1
144,509	+				-0.9
144,509	+				-1.6
144,509	+				-0.9
144,509	+				-2.1
144,510	-				-0.9
144,510	-				+0.1
144,510	-				+0.1
144,510	-				+0.3
144,510	-				-0.9
144,510	-				+0.7
144,510	-				-0.6
144,510	-				+1.0
144,510	-				-0.4
144,510	-				+1.1
144,510	-				-2.2
144,510	-				-0.8
144,510	-				+1.7
144,510	-				-0.4
144,510	-				-2.8
144,510	-				-0.6
144,510	-				+0.0
144,510	-				-1.6
144,510	-				-1.3
144,510	-				+0.1
144,510	-				-0.8
144,510	-				-0.6
144,510	-				-1.5
144,510	-				+0.4
144,510	-				+0.1
144,510	-				-0.7
144,510	-				-1.1
144,510	-				+0.8
144,510	-				-0.3
144,510	-				-0.1
144,510	-				+0.9
144,510	-				-2.5
144,510	-				+2.3
144,510	-				-0.3
144,510	-				+0.9
144,510	-				-0.9
144,510	-				+0.3
144,510	-				-1.3
144,510	-				+0.5
144,510	-				+0.2
144,510	-				+1.4
144,510	-				-1.1
144,528	+				-0.9
144,528	+				-2.1
144,528	+				-2.1
144,528	+				-1.6
144,528	+				-1.3
144,528	+				-0.9
144,528	+				+1.3
144,528	+				-0.9
144,528	+				-2.3
144,528	+				-2.3
144,528	+				-3.0
144,528	+				-0.9
144,528	+				+0.7
144,528	+				-1.3
144,528	+				-0.3
144,529	-				-0.1
144,529	-				+0.7
144,529	-				+0.5
144,529	-				-0.4
144,529	-				-0.6
144,529	-				+0.0
144,529	-				+3.3
144,529	-				-0.9
144,529	-				+1.9
144,529	-				-2.2
144,529	-				-1.8
144,529	-				+0.4
144,529	-				-0.1
144,529	-				-0.6
144,529	-				-0.1
144,529	-				+0.9
144,529	-				+1.1
144,529	-				+0.0
144,529	-				+0.4
144,529	-				-0.3
144,529	-				-0.6
144,592	+				-0.9
144,592	+				-2.9
144,592	+				-1.3
144,593	-				+0.3
144,593	-				-0.8
144,593	-				-2.1
144,593	-				-1.5
144,593	-				-0.8
144,615	+				-1.3
144,615	+				-0.3
144,615	+				-0.3
144,615	+				-1.3
144,615	+				-0.3
144,615	+				-1.3
144,616	-				-3.1
144,616	-				-0.3
144,616	-				-0.5
144,616	-				+2.0
144,616	-				-0.7
144,616	-				+0.1
144,616	-				+1.6
144,616	-				+1.3
144,753	-				+0.4
144,753	-				-0.9
144,859	+		LRK54_RS00675	0.17	-0.3
144,860	-		LRK54_RS00675	0.17	-0.3
144,861	+		LRK54_RS00675	0.17	-0.3
144,861	+		LRK54_RS00675	0.17	-0.9
144,861	+		LRK54_RS00675	0.17	-1.9
144,861	+		LRK54_RS00675	0.17	-1.9
144,862	-		LRK54_RS00675	0.17	-0.3
144,862	-		LRK54_RS00675	0.17	-2.1
144,862	-		LRK54_RS00675	0.17	-0.9
144,862	-		LRK54_RS00675	0.17	-0.3
144,862	-		LRK54_RS00675	0.17	-1.5
144,862	-		LRK54_RS00675	0.17	-1.1
144,862	-		LRK54_RS00675	0.17	-0.3
144,862	-		LRK54_RS00675	0.17	-1.6
144,862	-		LRK54_RS00675	0.17	-0.1
144,862	-		LRK54_RS00675	0.17	+0.7
144,882	+		LRK54_RS00675	0.18	-1.3
144,883	-		LRK54_RS00675	0.19	+0.7
144,956	+		LRK54_RS00675	0.24	-0.3
144,956	+		LRK54_RS00675	0.24	-2.1
144,956	+		LRK54_RS00675	0.24	-0.3
144,956	+		LRK54_RS00675	0.24	-0.0
144,956	+		LRK54_RS00675	0.24	-1.3
144,957	-		LRK54_RS00675	0.24	-1.6
144,957	-		LRK54_RS00675	0.24	-2.3
144,957	-		LRK54_RS00675	0.24	-1.1
144,957	-		LRK54_RS00675	0.24	-1.3
144,969	+		LRK54_RS00675	0.24	+0.7
144,969	+		LRK54_RS00675	0.24	-2.6
144,969	+		LRK54_RS00675	0.24	-1.9
144,969	+		LRK54_RS00675	0.24	-0.9
144,969	+		LRK54_RS00675	0.24	-0.6
144,969	+		LRK54_RS00675	0.24	-1.6
144,970	-		LRK54_RS00675	0.25	-0.0
144,970	-		LRK54_RS00675	0.25	-0.0
144,970	-		LRK54_RS00675	0.25	-1.9
144,970	-		LRK54_RS00675	0.25	-2.5
144,970	-		LRK54_RS00675	0.25	-1.6
144,970	-		LRK54_RS00675	0.25	-1.3
145,017	+		LRK54_RS00675	0.28	-0.9
145,017	+		LRK54_RS00675	0.28	-1.3
145,017	+		LRK54_RS00675	0.28	-1.6
145,017	+		LRK54_RS00675	0.28	-2.9
145,017	+		LRK54_RS00675	0.28	-0.9
145,017	+		LRK54_RS00675	0.28	-1.3
145,017	+		LRK54_RS00675	0.28	-1.3
145,017	+		LRK54_RS00675	0.28	-1.3
145,017	+		LRK54_RS00675	0.28	+0.7
145,017	+		LRK54_RS00675	0.28	-1.6
145,017	+		LRK54_RS00675	0.28	+0.0
145,017	+		LRK54_RS00675	0.28	-1.3
145,017	+		LRK54_RS00675	0.28	+0.7
145,017	+		LRK54_RS00675	0.28	-0.9
145,018	-		LRK54_RS00675	0.28	-1.6
145,018	-		LRK54_RS00675	0.28	-1.6
145,018	-		LRK54_RS00675	0.28	-1.9
145,018	-		LRK54_RS00675	0.28	-1.6
145,018	-		LRK54_RS00675	0.28	-1.6
145,018	-		LRK54_RS00675	0.28	-1.6
145,018	-		LRK54_RS00675	0.28	-1.3
145,018	-		LRK54_RS00675	0.28	-0.3
145,018	-		LRK54_RS00675	0.28	-0.5
145,018	-		LRK54_RS00675	0.28	+1.3
145,018	-		LRK54_RS00675	0.28	-0.3
145,018	-		LRK54_RS00675	0.28	-2.1
145,018	-		LRK54_RS00675	0.28	-1.6
145,018	-		LRK54_RS00675	0.28	-2.1
145,018	-		LRK54_RS00675	0.28	-0.7
145,018	-		LRK54_RS00675	0.28	+0.4
145,018	-		LRK54_RS00675	0.28	-0.3
145,018	-		LRK54_RS00675	0.28	-1.3
145,018	-		LRK54_RS00675	0.28	+1.7
145,044	+		LRK54_RS00675	0.30	-0.3
145,044	+		LRK54_RS00675	0.30	+0.7
145,044	+		LRK54_RS00675	0.30	-0.3
145,045	-		LRK54_RS00675	0.30	+0.7
145,045	-		LRK54_RS00675	0.30	-0.5
145,045	-		LRK54_RS00675	0.30	-0.9
145,045	-		LRK54_RS00675	0.30	-1.6
145,045	-		LRK54_RS00675	0.30	-0.7
145,045	-		LRK54_RS00675	0.30	-0.3
145,197	+		LRK54_RS00675	0.40	-0.3
145,230	+		LRK54_RS00675	0.42	-1.3
145,230	+		LRK54_RS00675	0.42	-1.9
145,230	+		LRK54_RS00675	0.42	-0.3
145,230	+		LRK54_RS00675	0.42	-0.3
145,230	+		LRK54_RS00675	0.42	-2.8
145,230	+		LRK54_RS00675	0.42	-0.9
145,231	-		LRK54_RS00675	0.42	+3.3
145,231	-		LRK54_RS00675	0.42	-1.1
145,231	-		LRK54_RS00675	0.42	-1.5
145,231	-		LRK54_RS00675	0.42	+0.7
145,231	-		LRK54_RS00675	0.42	-1.6
145,231	-		LRK54_RS00675	0.42	-0.6
145,231	-		LRK54_RS00675	0.42	-0.3
145,231	-		LRK54_RS00675	0.42	-0.0
145,231	-		LRK54_RS00675	0.42	+0.7
145,231	-		LRK54_RS00675	0.42	-1.9
145,231	-		LRK54_RS00675	0.42	-2.6
145,231	-		LRK54_RS00675	0.42	-0.9
145,231	-		LRK54_RS00675	0.42	-0.9
145,231	-		LRK54_RS00675	0.42	-2.8
145,231	-		LRK54_RS00675	0.42	-1.9
145,231	-		LRK54_RS00675	0.42	-2.3
145,231	-		LRK54_RS00675	0.42	-0.1
145,284	+		LRK54_RS00675	0.46	+0.7
145,284	+		LRK54_RS00675	0.46	-1.3
145,284	+		LRK54_RS00675	0.46	-2.1
145,284	+		LRK54_RS00675	0.46	-0.3
145,284	+		LRK54_RS00675	0.46	-1.9
145,284	+		LRK54_RS00675	0.46	-1.3
145,284	+		LRK54_RS00675	0.46	-2.1
145,285	-		LRK54_RS00675	0.46	-0.9
145,285	-		LRK54_RS00675	0.46	-3.5
145,285	-		LRK54_RS00675	0.46	-0.3
145,285	-		LRK54_RS00675	0.46	-1.9
145,285	-		LRK54_RS00675	0.46	-0.6
145,285	-		LRK54_RS00675	0.46	-0.3
145,285	-		LRK54_RS00675	0.46	-1.9
145,285	-		LRK54_RS00675	0.46	-0.3
145,285	-		LRK54_RS00675	0.46	-1.2
145,339	-		LRK54_RS00675	0.50	-0.9
145,339	-		LRK54_RS00675	0.50	-0.9
145,339	-		LRK54_RS00675	0.50	-1.6
145,340	+		LRK54_RS00675	0.50	-1.6
145,340	+		LRK54_RS00675	0.50	-2.6
145,341	-		LRK54_RS00675	0.50	-1.9
145,341	-		LRK54_RS00675	0.50	-3.0
145,341	-		LRK54_RS00675	0.50	-1.3
145,341	-		LRK54_RS00675	0.50	-0.3
145,341	-		LRK54_RS00675	0.50	-0.9
145,341	-		LRK54_RS00675	0.50	-1.3
145,341	-		LRK54_RS00675	0.50	-1.3
145,341	-		LRK54_RS00675	0.50	-0.9
145,428	+		LRK54_RS00675	0.56	-1.3
145,428	+		LRK54_RS00675	0.56	-2.1
145,428	+		LRK54_RS00675	0.56	-1.6
145,428	+		LRK54_RS00675	0.56	-2.1
145,428	+		LRK54_RS00675	0.56	-1.1
145,428	+		LRK54_RS00675	0.56	-0.9
145,429	-		LRK54_RS00675	0.56	+1.0
145,429	-		LRK54_RS00675	0.56	-1.6
145,429	-		LRK54_RS00675	0.56	-0.0
145,429	-		LRK54_RS00675	0.56	-0.0
145,429	-		LRK54_RS00675	0.56	+1.1
145,429	-		LRK54_RS00675	0.56	-2.1
145,429	-		LRK54_RS00675	0.56	-1.6
145,429	-		LRK54_RS00675	0.56	-0.7
145,429	-		LRK54_RS00675	0.56	-1.6
145,429	-		LRK54_RS00675	0.56	-2.5
145,587	+		LRK54_RS00675	0.67	-1.6
145,587	+		LRK54_RS00675	0.67	-0.3
145,587	+		LRK54_RS00675	0.67	-2.8
145,587	+		LRK54_RS00675	0.67	-1.6
145,587	+		LRK54_RS00675	0.67	-2.0
145,588	-		LRK54_RS00675	0.67	-1.3
145,588	-		LRK54_RS00675	0.67	+0.7
145,620	+		LRK54_RS00675	0.69	-0.3
145,620	+		LRK54_RS00675	0.69	-2.6
145,628	+		LRK54_RS00675	0.70	-1.3
145,629	-		LRK54_RS00675	0.70	+0.4
145,629	-		LRK54_RS00675	0.70	-2.5
145,629	-		LRK54_RS00675	0.70	-0.3
145,638	-		LRK54_RS00675	0.71	-0.3
145,638	-		LRK54_RS00675	0.71	-1.6
145,683	+		LRK54_RS00675	0.74	+0.7
145,683	+		LRK54_RS00675	0.74	+0.7
145,684	-		LRK54_RS00675	0.74	-0.9
145,684	-		LRK54_RS00675	0.74	+0.7
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146,850	+		LRK54_RS00680	0.73	-2.9
146,850	+		LRK54_RS00680	0.73	-2.1
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146,850	+		LRK54_RS00680	0.73	-1.3
146,850	+		LRK54_RS00680	0.73	-3.1
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146,850	+		LRK54_RS00680	0.73	-2.6
146,850	+		LRK54_RS00680	0.73	-2.5
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146,850	+		LRK54_RS00680	0.73	-3.0
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146,851	-		LRK54_RS00680	0.73	-1.9
146,851	-		LRK54_RS00680	0.73	-1.6
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146,851	-		LRK54_RS00680	0.73	-0.6
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146,947	-		LRK54_RS00680	0.87	-1.2
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