Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02642

Experiment: PYE with Carbenicillin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02641 and CCNA_02642 overlap by 8 nucleotidesCCNA_02642 and CCNA_02643 overlap by 4 nucleotides CCNA_02641: CCNA_02641 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 2,793,515 to 2,794,903 _02641 CCNA_02642: CCNA_02642 - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,794,896 to 2,796,356 _02642 CCNA_02643: CCNA_02643 - penicillin-binding protein FtsI, at 2,796,353 to 2,798,122 _02643 Position (kb) 2794 2795 2796 2797Strain fitness (log2 ratio) -2 -1 0 1at 2794.881 kb on + strandat 2794.884 kb on + strandat 2794.884 kb on + strandat 2794.884 kb on + strandat 2794.892 kb on - strandat 2794.892 kb on - strandat 2794.909 kb on + strandat 2794.911 kb on + strandat 2796.434 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
remove
2,794,881 + -0.4
2,794,884 + -1.5
2,794,884 + -0.2
2,794,884 + -1.8
2,794,892 - +0.1
2,794,892 - -1.0
2,794,909 + -2.1
2,794,911 + -1.4
2,796,434 - +0.7

Or see this region's nucleotide sequence