Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02638 and CCNA_02639 are separated by 3 nucleotides CCNA_02639 and CCNA_02640 are separated by 14 nucleotides
CCNA_02638: CCNA_02638 - CLC voltage-gated chloride channel, at 2,789,113 to 2,790,969
_02638
CCNA_02639: CCNA_02639 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 2,790,973 to 2,792,388
_02639
CCNA_02640: CCNA_02640 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 2,792,403 to 2,793,515
_02640
Position (kb)
2790
2791
2792
2793 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2789.983 kb on + strand, within CCNA_02638 at 2789.983 kb on + strand, within CCNA_02638 at 2789.991 kb on - strand, within CCNA_02638 at 2789.992 kb on - strand, within CCNA_02638 at 2790.004 kb on - strand, within CCNA_02638 at 2790.073 kb on + strand, within CCNA_02638 at 2790.092 kb on + strand, within CCNA_02638 at 2790.092 kb on + strand, within CCNA_02638 at 2790.097 kb on + strand, within CCNA_02638 at 2790.097 kb on + strand, within CCNA_02638 at 2790.097 kb on + strand, within CCNA_02638 at 2790.105 kb on - strand, within CCNA_02638 at 2790.139 kb on + strand, within CCNA_02638 at 2790.177 kb on + strand, within CCNA_02638 at 2790.185 kb on - strand, within CCNA_02638 at 2790.187 kb on - strand, within CCNA_02638 at 2790.203 kb on + strand, within CCNA_02638 at 2790.316 kb on + strand, within CCNA_02638 at 2790.319 kb on - strand, within CCNA_02638 at 2790.362 kb on + strand, within CCNA_02638 at 2790.394 kb on - strand, within CCNA_02638 at 2790.396 kb on + strand, within CCNA_02638 at 2790.404 kb on - strand, within CCNA_02638 at 2790.422 kb on - strand, within CCNA_02638 at 2790.431 kb on + strand, within CCNA_02638 at 2790.436 kb on + strand, within CCNA_02638 at 2790.442 kb on + strand, within CCNA_02638 at 2790.453 kb on + strand, within CCNA_02638 at 2790.480 kb on - strand, within CCNA_02638 at 2790.525 kb on - strand, within CCNA_02638 at 2790.531 kb on - strand, within CCNA_02638 at 2790.589 kb on + strand, within CCNA_02638 at 2790.602 kb on + strand, within CCNA_02638 at 2790.610 kb on - strand, within CCNA_02638 at 2790.610 kb on - strand, within CCNA_02638 at 2790.618 kb on + strand, within CCNA_02638 at 2790.621 kb on - strand, within CCNA_02638 at 2790.626 kb on - strand, within CCNA_02638 at 2790.648 kb on + strand, within CCNA_02638 at 2790.662 kb on + strand, within CCNA_02638 at 2790.662 kb on + strand, within CCNA_02638 at 2790.662 kb on + strand, within CCNA_02638 at 2790.670 kb on - strand, within CCNA_02638 at 2790.670 kb on - strand, within CCNA_02638 at 2790.670 kb on - strand, within CCNA_02638 at 2790.698 kb on + strand, within CCNA_02638 at 2790.784 kb on - strand at 2790.865 kb on + strand at 2790.895 kb on + strand at 2790.895 kb on + strand at 2790.903 kb on - strand at 2790.903 kb on - strand at 2790.903 kb on - strand at 2790.915 kb on - strand at 2790.937 kb on + strand at 2791.010 kb on - strand at 2792.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 2,789,983 + CCNA_02638 0.47 -2.9 2,789,983 + CCNA_02638 0.47 +0.1 2,789,991 - CCNA_02638 0.47 -0.5 2,789,992 - CCNA_02638 0.47 -2.0 2,790,004 - CCNA_02638 0.48 +0.9 2,790,073 + CCNA_02638 0.52 -0.1 2,790,092 + CCNA_02638 0.53 -3.1 2,790,092 + CCNA_02638 0.53 -0.5 2,790,097 + CCNA_02638 0.53 -1.2 2,790,097 + CCNA_02638 0.53 -0.2 2,790,097 + CCNA_02638 0.53 +1.2 2,790,105 - CCNA_02638 0.53 +0.4 2,790,139 + CCNA_02638 0.55 -1.2 2,790,177 + CCNA_02638 0.57 -0.9 2,790,185 - CCNA_02638 0.58 -1.7 2,790,187 - CCNA_02638 0.58 -1.3 2,790,203 + CCNA_02638 0.59 -0.1 2,790,316 + CCNA_02638 0.65 -2.4 2,790,319 - CCNA_02638 0.65 -1.3 2,790,362 + CCNA_02638 0.67 -0.3 2,790,394 - CCNA_02638 0.69 -0.8 2,790,396 + CCNA_02638 0.69 -1.2 2,790,404 - CCNA_02638 0.70 -0.2 2,790,422 - CCNA_02638 0.70 -0.1 2,790,431 + CCNA_02638 0.71 +0.1 2,790,436 + CCNA_02638 0.71 -1.2 2,790,442 + CCNA_02638 0.72 -0.9 2,790,453 + CCNA_02638 0.72 +1.7 2,790,480 - CCNA_02638 0.74 +0.0 2,790,525 - CCNA_02638 0.76 +1.2 2,790,531 - CCNA_02638 0.76 +0.6 2,790,589 + CCNA_02638 0.79 -0.5 2,790,602 + CCNA_02638 0.80 -1.8 2,790,610 - CCNA_02638 0.81 +1.9 2,790,610 - CCNA_02638 0.81 -0.6 2,790,618 + CCNA_02638 0.81 +0.3 2,790,621 - CCNA_02638 0.81 +0.1 2,790,626 - CCNA_02638 0.81 -0.1 2,790,648 + CCNA_02638 0.83 -2.0 2,790,662 + CCNA_02638 0.83 -0.5 2,790,662 + CCNA_02638 0.83 -0.9 2,790,662 + CCNA_02638 0.83 +1.1 2,790,670 - CCNA_02638 0.84 -1.5 2,790,670 - CCNA_02638 0.84 -1.1 2,790,670 - CCNA_02638 0.84 +0.5 2,790,698 + CCNA_02638 0.85 -0.5 2,790,784 - -0.9 2,790,865 + +0.2 2,790,895 + -0.4 2,790,895 + -1.6 2,790,903 - +2.1 2,790,903 - +0.0 2,790,903 - +0.7 2,790,915 - +1.5 2,790,937 + -0.2 2,791,010 - +1.6 2,792,406 - +0.5
Or see this region's nucleotide sequence