Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02639

Experiment: PYE with Carbenicillin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02638 and CCNA_02639 are separated by 3 nucleotidesCCNA_02639 and CCNA_02640 are separated by 14 nucleotides CCNA_02638: CCNA_02638 - CLC voltage-gated chloride channel, at 2,789,113 to 2,790,969 _02638 CCNA_02639: CCNA_02639 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 2,790,973 to 2,792,388 _02639 CCNA_02640: CCNA_02640 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 2,792,403 to 2,793,515 _02640 Position (kb) 2790 2791 2792 2793Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2789.983 kb on + strand, within CCNA_02638at 2789.983 kb on + strand, within CCNA_02638at 2789.991 kb on - strand, within CCNA_02638at 2789.992 kb on - strand, within CCNA_02638at 2790.004 kb on - strand, within CCNA_02638at 2790.073 kb on + strand, within CCNA_02638at 2790.092 kb on + strand, within CCNA_02638at 2790.092 kb on + strand, within CCNA_02638at 2790.097 kb on + strand, within CCNA_02638at 2790.097 kb on + strand, within CCNA_02638at 2790.097 kb on + strand, within CCNA_02638at 2790.105 kb on - strand, within CCNA_02638at 2790.139 kb on + strand, within CCNA_02638at 2790.177 kb on + strand, within CCNA_02638at 2790.185 kb on - strand, within CCNA_02638at 2790.187 kb on - strand, within CCNA_02638at 2790.203 kb on + strand, within CCNA_02638at 2790.316 kb on + strand, within CCNA_02638at 2790.319 kb on - strand, within CCNA_02638at 2790.362 kb on + strand, within CCNA_02638at 2790.394 kb on - strand, within CCNA_02638at 2790.396 kb on + strand, within CCNA_02638at 2790.404 kb on - strand, within CCNA_02638at 2790.422 kb on - strand, within CCNA_02638at 2790.431 kb on + strand, within CCNA_02638at 2790.436 kb on + strand, within CCNA_02638at 2790.442 kb on + strand, within CCNA_02638at 2790.453 kb on + strand, within CCNA_02638at 2790.480 kb on - strand, within CCNA_02638at 2790.525 kb on - strand, within CCNA_02638at 2790.531 kb on - strand, within CCNA_02638at 2790.589 kb on + strand, within CCNA_02638at 2790.602 kb on + strand, within CCNA_02638at 2790.610 kb on - strand, within CCNA_02638at 2790.610 kb on - strand, within CCNA_02638at 2790.618 kb on + strand, within CCNA_02638at 2790.621 kb on - strand, within CCNA_02638at 2790.626 kb on - strand, within CCNA_02638at 2790.648 kb on + strand, within CCNA_02638at 2790.662 kb on + strand, within CCNA_02638at 2790.662 kb on + strand, within CCNA_02638at 2790.662 kb on + strand, within CCNA_02638at 2790.670 kb on - strand, within CCNA_02638at 2790.670 kb on - strand, within CCNA_02638at 2790.670 kb on - strand, within CCNA_02638at 2790.698 kb on + strand, within CCNA_02638at 2790.784 kb on - strandat 2790.865 kb on + strandat 2790.895 kb on + strandat 2790.895 kb on + strandat 2790.903 kb on - strandat 2790.903 kb on - strandat 2790.903 kb on - strandat 2790.915 kb on - strandat 2790.937 kb on + strandat 2791.010 kb on - strandat 2792.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
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2,789,983 + CCNA_02638 0.47 -2.9
2,789,983 + CCNA_02638 0.47 +0.1
2,789,991 - CCNA_02638 0.47 -0.5
2,789,992 - CCNA_02638 0.47 -2.0
2,790,004 - CCNA_02638 0.48 +0.9
2,790,073 + CCNA_02638 0.52 -0.1
2,790,092 + CCNA_02638 0.53 -3.1
2,790,092 + CCNA_02638 0.53 -0.5
2,790,097 + CCNA_02638 0.53 -1.2
2,790,097 + CCNA_02638 0.53 -0.2
2,790,097 + CCNA_02638 0.53 +1.2
2,790,105 - CCNA_02638 0.53 +0.4
2,790,139 + CCNA_02638 0.55 -1.2
2,790,177 + CCNA_02638 0.57 -0.9
2,790,185 - CCNA_02638 0.58 -1.7
2,790,187 - CCNA_02638 0.58 -1.3
2,790,203 + CCNA_02638 0.59 -0.1
2,790,316 + CCNA_02638 0.65 -2.4
2,790,319 - CCNA_02638 0.65 -1.3
2,790,362 + CCNA_02638 0.67 -0.3
2,790,394 - CCNA_02638 0.69 -0.8
2,790,396 + CCNA_02638 0.69 -1.2
2,790,404 - CCNA_02638 0.70 -0.2
2,790,422 - CCNA_02638 0.70 -0.1
2,790,431 + CCNA_02638 0.71 +0.1
2,790,436 + CCNA_02638 0.71 -1.2
2,790,442 + CCNA_02638 0.72 -0.9
2,790,453 + CCNA_02638 0.72 +1.7
2,790,480 - CCNA_02638 0.74 +0.0
2,790,525 - CCNA_02638 0.76 +1.2
2,790,531 - CCNA_02638 0.76 +0.6
2,790,589 + CCNA_02638 0.79 -0.5
2,790,602 + CCNA_02638 0.80 -1.8
2,790,610 - CCNA_02638 0.81 +1.9
2,790,610 - CCNA_02638 0.81 -0.6
2,790,618 + CCNA_02638 0.81 +0.3
2,790,621 - CCNA_02638 0.81 +0.1
2,790,626 - CCNA_02638 0.81 -0.1
2,790,648 + CCNA_02638 0.83 -2.0
2,790,662 + CCNA_02638 0.83 -0.5
2,790,662 + CCNA_02638 0.83 -0.9
2,790,662 + CCNA_02638 0.83 +1.1
2,790,670 - CCNA_02638 0.84 -1.5
2,790,670 - CCNA_02638 0.84 -1.1
2,790,670 - CCNA_02638 0.84 +0.5
2,790,698 + CCNA_02638 0.85 -0.5
2,790,784 - -0.9
2,790,865 + +0.2
2,790,895 + -0.4
2,790,895 + -1.6
2,790,903 - +2.1
2,790,903 - +0.0
2,790,903 - +0.7
2,790,915 - +1.5
2,790,937 + -0.2
2,791,010 - +1.6
2,792,406 - +0.5

Or see this region's nucleotide sequence