Experiment: PYE with Carbenicillin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02628 and CCNA_02629 are separated by 151 nucleotides CCNA_02629 and CCNA_02630 overlap by 2 nucleotides CCNA_02630 and CCNA_02631 are separated by 69 nucleotides
CCNA_02628: CCNA_02628 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,778,529 to 2,779,434
_02628
CCNA_02629: CCNA_02629 - UDP-N-acetylmuramate--alanine ligase, at 2,779,586 to 2,781,007
_02629
CCNA_02630: CCNA_02630 - hypothetical protein, at 2,781,006 to 2,781,527
_02630
CCNA_02631: CCNA_02631 - P-loop NTPase-related protein, at 2,781,597 to 2,781,770
_02631
Position (kb)
2779
2780
2781
2782 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2779.409 kb on + strand at 2779.468 kb on + strand at 2779.497 kb on - strand at 2779.497 kb on - strand at 2779.499 kb on + strand at 2779.552 kb on - strand at 2779.566 kb on + strand at 2779.592 kb on + strand at 2779.599 kb on + strand at 2779.607 kb on - strand at 2779.607 kb on - strand at 2781.021 kb on + strand at 2781.072 kb on + strand, within CCNA_02630 at 2781.080 kb on - strand, within CCNA_02630 at 2781.091 kb on - strand, within CCNA_02630 at 2781.118 kb on + strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.183 kb on - strand, within CCNA_02630 at 2781.183 kb on - strand, within CCNA_02630 at 2781.196 kb on + strand, within CCNA_02630 at 2781.204 kb on - strand, within CCNA_02630 at 2781.252 kb on - strand, within CCNA_02630 at 2781.254 kb on + strand, within CCNA_02630 at 2781.287 kb on - strand, within CCNA_02630 at 2781.315 kb on + strand, within CCNA_02630 at 2781.433 kb on + strand, within CCNA_02630 at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.613 kb on + strand at 2781.623 kb on + strand, within CCNA_02631 at 2781.640 kb on - strand, within CCNA_02631 at 2781.724 kb on + strand, within CCNA_02631 at 2781.732 kb on - strand, within CCNA_02631 at 2781.733 kb on + strand, within CCNA_02631 at 2781.751 kb on + strand, within CCNA_02631 at 2781.841 kb on - strand at 2781.854 kb on - strand at 2781.865 kb on - strand at 2781.884 kb on - strand at 2781.922 kb on + strand at 2781.930 kb on + strand at 2781.961 kb on + strand at 2781.979 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml remove 2,779,409 + +0.8 2,779,468 + -0.5 2,779,497 - +1.5 2,779,497 - +0.3 2,779,499 + -1.5 2,779,552 - +4.5 2,779,566 + -2.2 2,779,592 + -0.4 2,779,599 + -2.2 2,779,607 - +1.4 2,779,607 - +1.2 2,781,021 + -0.6 2,781,072 + CCNA_02630 0.13 +4.3 2,781,080 - CCNA_02630 0.14 -0.4 2,781,091 - CCNA_02630 0.16 -0.1 2,781,118 + CCNA_02630 0.21 -0.1 2,781,126 - CCNA_02630 0.23 +1.2 2,781,126 - CCNA_02630 0.23 -1.9 2,781,183 - CCNA_02630 0.34 -0.2 2,781,183 - CCNA_02630 0.34 -0.4 2,781,196 + CCNA_02630 0.36 -1.0 2,781,204 - CCNA_02630 0.38 -0.6 2,781,252 - CCNA_02630 0.47 -0.5 2,781,254 + CCNA_02630 0.48 -0.2 2,781,287 - CCNA_02630 0.54 -0.9 2,781,315 + CCNA_02630 0.59 +1.8 2,781,433 + CCNA_02630 0.82 +1.0 2,781,529 - +3.1 2,781,529 - +0.7 2,781,529 - -1.4 2,781,529 - +0.7 2,781,613 + -1.2 2,781,623 + CCNA_02631 0.15 -1.4 2,781,640 - CCNA_02631 0.25 -0.4 2,781,724 + CCNA_02631 0.73 +0.2 2,781,732 - CCNA_02631 0.78 +0.6 2,781,733 + CCNA_02631 0.78 -0.3 2,781,751 + CCNA_02631 0.89 +0.5 2,781,841 - +2.5 2,781,854 - -1.3 2,781,865 - -1.2 2,781,884 - +0.5 2,781,922 + +1.2 2,781,930 + -0.6 2,781,961 + -2.1 2,781,979 + -1.0 2,781,996 + -1.0 2,781,996 + +0.3 2,781,996 + -0.7 2,781,996 + -0.7 2,781,996 + +0.6 2,781,996 + +0.6 2,782,004 - -0.8 2,782,004 - +0.9 2,782,004 - +0.9 2,782,004 - +0.6 2,782,004 - -0.1 2,782,004 - -0.8 2,782,004 - +0.4
Or see this region's nucleotide sequence