Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02629

Experiment: PYE with Carbenicillin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02628 and CCNA_02629 are separated by 151 nucleotidesCCNA_02629 and CCNA_02630 overlap by 2 nucleotidesCCNA_02630 and CCNA_02631 are separated by 69 nucleotides CCNA_02628: CCNA_02628 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,778,529 to 2,779,434 _02628 CCNA_02629: CCNA_02629 - UDP-N-acetylmuramate--alanine ligase, at 2,779,586 to 2,781,007 _02629 CCNA_02630: CCNA_02630 - hypothetical protein, at 2,781,006 to 2,781,527 _02630 CCNA_02631: CCNA_02631 - P-loop NTPase-related protein, at 2,781,597 to 2,781,770 _02631 Position (kb) 2779 2780 2781 2782Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2779.409 kb on + strandat 2779.468 kb on + strandat 2779.497 kb on - strandat 2779.497 kb on - strandat 2779.499 kb on + strandat 2779.552 kb on - strandat 2779.566 kb on + strandat 2779.592 kb on + strandat 2779.599 kb on + strandat 2779.607 kb on - strandat 2779.607 kb on - strandat 2781.021 kb on + strandat 2781.072 kb on + strand, within CCNA_02630at 2781.080 kb on - strand, within CCNA_02630at 2781.091 kb on - strand, within CCNA_02630at 2781.118 kb on + strand, within CCNA_02630at 2781.126 kb on - strand, within CCNA_02630at 2781.126 kb on - strand, within CCNA_02630at 2781.183 kb on - strand, within CCNA_02630at 2781.183 kb on - strand, within CCNA_02630at 2781.196 kb on + strand, within CCNA_02630at 2781.204 kb on - strand, within CCNA_02630at 2781.252 kb on - strand, within CCNA_02630at 2781.254 kb on + strand, within CCNA_02630at 2781.287 kb on - strand, within CCNA_02630at 2781.315 kb on + strand, within CCNA_02630at 2781.433 kb on + strand, within CCNA_02630at 2781.529 kb on - strandat 2781.529 kb on - strandat 2781.529 kb on - strandat 2781.529 kb on - strandat 2781.613 kb on + strandat 2781.623 kb on + strand, within CCNA_02631at 2781.640 kb on - strand, within CCNA_02631at 2781.724 kb on + strand, within CCNA_02631at 2781.732 kb on - strand, within CCNA_02631at 2781.733 kb on + strand, within CCNA_02631at 2781.751 kb on + strand, within CCNA_02631at 2781.841 kb on - strandat 2781.854 kb on - strandat 2781.865 kb on - strandat 2781.884 kb on - strandat 2781.922 kb on + strandat 2781.930 kb on + strandat 2781.961 kb on + strandat 2781.979 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.25 mg/ml
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2,779,409 + +0.8
2,779,468 + -0.5
2,779,497 - +1.5
2,779,497 - +0.3
2,779,499 + -1.5
2,779,552 - +4.5
2,779,566 + -2.2
2,779,592 + -0.4
2,779,599 + -2.2
2,779,607 - +1.4
2,779,607 - +1.2
2,781,021 + -0.6
2,781,072 + CCNA_02630 0.13 +4.3
2,781,080 - CCNA_02630 0.14 -0.4
2,781,091 - CCNA_02630 0.16 -0.1
2,781,118 + CCNA_02630 0.21 -0.1
2,781,126 - CCNA_02630 0.23 +1.2
2,781,126 - CCNA_02630 0.23 -1.9
2,781,183 - CCNA_02630 0.34 -0.2
2,781,183 - CCNA_02630 0.34 -0.4
2,781,196 + CCNA_02630 0.36 -1.0
2,781,204 - CCNA_02630 0.38 -0.6
2,781,252 - CCNA_02630 0.47 -0.5
2,781,254 + CCNA_02630 0.48 -0.2
2,781,287 - CCNA_02630 0.54 -0.9
2,781,315 + CCNA_02630 0.59 +1.8
2,781,433 + CCNA_02630 0.82 +1.0
2,781,529 - +3.1
2,781,529 - +0.7
2,781,529 - -1.4
2,781,529 - +0.7
2,781,613 + -1.2
2,781,623 + CCNA_02631 0.15 -1.4
2,781,640 - CCNA_02631 0.25 -0.4
2,781,724 + CCNA_02631 0.73 +0.2
2,781,732 - CCNA_02631 0.78 +0.6
2,781,733 + CCNA_02631 0.78 -0.3
2,781,751 + CCNA_02631 0.89 +0.5
2,781,841 - +2.5
2,781,854 - -1.3
2,781,865 - -1.2
2,781,884 - +0.5
2,781,922 + +1.2
2,781,930 + -0.6
2,781,961 + -2.1
2,781,979 + -1.0
2,781,996 + -1.0
2,781,996 + +0.3
2,781,996 + -0.7
2,781,996 + -0.7
2,781,996 + +0.6
2,781,996 + +0.6
2,782,004 - -0.8
2,782,004 - +0.9
2,782,004 - +0.9
2,782,004 - +0.6
2,782,004 - -0.1
2,782,004 - -0.8
2,782,004 - +0.4

Or see this region's nucleotide sequence