Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3643 and Shewana3_3644 overlap by 1 nucleotides Shewana3_3644 and Shewana3_3645 are separated by 135 nucleotides Shewana3_3645 and Shewana3_3646 are separated by 2 nucleotides
Shewana3_3643: Shewana3_3643 - hypothetical protein (RefSeq), at 4,374,994 to 4,379,247
_3643
Shewana3_3644: Shewana3_3644 - ribonuclease G (RefSeq), at 4,379,247 to 4,380,755
_3644
Shewana3_3645: Shewana3_3645 - maf protein (RefSeq), at 4,380,891 to 4,381,475
_3645
Shewana3_3646: Shewana3_3646 - rod shape-determining protein MreD (RefSeq), at 4,381,478 to 4,381,966
_3646
Position (kb)
4379
4380
4381 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4378.659 kb on + strand, within Shewana3_3643 at 4378.954 kb on + strand at 4378.964 kb on + strand at 4378.964 kb on + strand at 4379.367 kb on + strand at 4379.367 kb on + strand at 4379.375 kb on - strand at 4379.375 kb on - strand at 4379.375 kb on - strand at 4379.375 kb on - strand at 4379.375 kb on - strand at 4379.607 kb on - strand, within Shewana3_3644 at 4379.737 kb on + strand, within Shewana3_3644 at 4380.078 kb on - strand, within Shewana3_3644 at 4380.128 kb on + strand, within Shewana3_3644 at 4380.136 kb on - strand, within Shewana3_3644 at 4380.303 kb on + strand, within Shewana3_3644 at 4380.671 kb on - strand at 4380.885 kb on - strand at 4381.131 kb on - strand, within Shewana3_3645 at 4381.161 kb on - strand, within Shewana3_3645 at 4381.247 kb on + strand, within Shewana3_3645 at 4381.328 kb on + strand, within Shewana3_3645 at 4381.328 kb on + strand, within Shewana3_3645 at 4381.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,378,659 + Shewana3_3643 0.86 -0.8 4,378,954 + -1.0 4,378,964 + -0.4 4,378,964 + -0.4 4,379,367 + +0.3 4,379,367 + +1.2 4,379,375 - -1.2 4,379,375 - +0.3 4,379,375 - -1.2 4,379,375 - -1.4 4,379,375 - +0.0 4,379,607 - Shewana3_3644 0.24 -1.6 4,379,737 + Shewana3_3644 0.32 -1.2 4,380,078 - Shewana3_3644 0.55 -3.4 4,380,128 + Shewana3_3644 0.58 -1.0 4,380,136 - Shewana3_3644 0.59 -0.4 4,380,303 + Shewana3_3644 0.70 +0.4 4,380,671 - -0.0 4,380,885 - +0.7 4,381,131 - Shewana3_3645 0.41 +0.8 4,381,161 - Shewana3_3645 0.46 -0.2 4,381,247 + Shewana3_3645 0.61 +0.8 4,381,328 + Shewana3_3645 0.75 +2.0 4,381,328 + Shewana3_3645 0.75 -0.6 4,381,473 - -0.1
Or see this region's nucleotide sequence