Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2224 and Shewana3_2225 overlap by 4 nucleotides Shewana3_2225 and Shewana3_2226 are separated by 57 nucleotides Shewana3_2226 and Shewana3_2227 are separated by 240 nucleotides
Shewana3_2224: Shewana3_2224 - EmrB/QacA family drug resistance transporter (RefSeq), at 2,673,518 to 2,675,098
_2224
Shewana3_2225: Shewana3_2225 - secretion protein HlyD family protein (RefSeq), at 2,675,095 to 2,676,150
_2225
Shewana3_2226: Shewana3_2226 - MarR family transcriptional regulator (RefSeq), at 2,676,208 to 2,676,642
_2226
Shewana3_2227: Shewana3_2227 - diguanylate cyclase (RefSeq), at 2,676,883 to 2,677,911
_2227
Position (kb)
2675
2676
2677 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2674.123 kb on - strand, within Shewana3_2224 at 2674.139 kb on - strand, within Shewana3_2224 at 2674.485 kb on + strand, within Shewana3_2224 at 2674.649 kb on + strand, within Shewana3_2224 at 2674.750 kb on + strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.801 kb on + strand, within Shewana3_2224 at 2674.855 kb on + strand, within Shewana3_2224 at 2674.939 kb on + strand, within Shewana3_2224 at 2675.371 kb on - strand, within Shewana3_2225 at 2675.459 kb on - strand, within Shewana3_2225 at 2675.529 kb on - strand, within Shewana3_2225 at 2676.260 kb on - strand, within Shewana3_2226 at 2676.292 kb on + strand, within Shewana3_2226 at 2676.405 kb on + strand, within Shewana3_2226 at 2676.418 kb on - strand, within Shewana3_2226 at 2676.450 kb on + strand, within Shewana3_2226 at 2676.491 kb on - strand, within Shewana3_2226 at 2676.612 kb on - strand at 2677.065 kb on + strand, within Shewana3_2227 at 2677.149 kb on + strand, within Shewana3_2227
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 2,674,123 - Shewana3_2224 0.38 +2.4 2,674,139 - Shewana3_2224 0.39 -0.9 2,674,485 + Shewana3_2224 0.61 -2.1 2,674,649 + Shewana3_2224 0.72 +0.9 2,674,750 + Shewana3_2224 0.78 -1.4 2,674,758 - Shewana3_2224 0.78 +0.3 2,674,758 - Shewana3_2224 0.78 +2.4 2,674,758 - Shewana3_2224 0.78 -1.8 2,674,758 - Shewana3_2224 0.78 -0.2 2,674,801 + Shewana3_2224 0.81 +0.4 2,674,855 + Shewana3_2224 0.85 -0.6 2,674,939 + Shewana3_2224 0.90 -2.0 2,675,371 - Shewana3_2225 0.26 +1.9 2,675,459 - Shewana3_2225 0.34 -1.9 2,675,529 - Shewana3_2225 0.41 -1.0 2,676,260 - Shewana3_2226 0.12 +1.2 2,676,292 + Shewana3_2226 0.19 -1.7 2,676,405 + Shewana3_2226 0.45 +1.4 2,676,418 - Shewana3_2226 0.48 -0.5 2,676,450 + Shewana3_2226 0.56 +1.4 2,676,491 - Shewana3_2226 0.65 +1.4 2,676,612 - +1.6 2,677,065 + Shewana3_2227 0.18 +1.4 2,677,149 + Shewana3_2227 0.26 -0.7
Or see this region's nucleotide sequence