Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1370 and Shewana3_1371 are separated by 221 nucleotides Shewana3_1371 and Shewana3_1372 are separated by 122 nucleotides
Shewana3_1370: Shewana3_1370 - hypothetical protein (RefSeq), at 1,581,349 to 1,583,400
_1370
Shewana3_1371: Shewana3_1371 - VacJ family lipoprotein (RefSeq), at 1,583,622 to 1,584,407
_1371
Shewana3_1372: Shewana3_1372 - response regulator receiver protein (RefSeq), at 1,584,530 to 1,585,633
_1372
Position (kb)
1583
1584
1585 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1582.646 kb on + strand, within Shewana3_1370 at 1582.750 kb on + strand, within Shewana3_1370 at 1582.923 kb on - strand, within Shewana3_1370 at 1582.925 kb on + strand, within Shewana3_1370 at 1582.933 kb on - strand, within Shewana3_1370 at 1583.039 kb on + strand, within Shewana3_1370 at 1583.118 kb on + strand, within Shewana3_1370 at 1583.118 kb on + strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.260 kb on + strand at 1583.530 kb on - strand at 1583.584 kb on + strand at 1583.594 kb on + strand at 1583.675 kb on + strand at 1583.680 kb on + strand at 1583.688 kb on - strand at 1583.714 kb on + strand, within Shewana3_1371 at 1583.714 kb on + strand, within Shewana3_1371 at 1584.066 kb on + strand, within Shewana3_1371 at 1584.066 kb on + strand, within Shewana3_1371 at 1584.122 kb on + strand, within Shewana3_1371 at 1584.192 kb on + strand, within Shewana3_1371 at 1584.285 kb on + strand, within Shewana3_1371 at 1584.287 kb on + strand, within Shewana3_1371 at 1584.392 kb on + strand at 1584.419 kb on + strand at 1584.738 kb on - strand, within Shewana3_1372 at 1584.974 kb on - strand, within Shewana3_1372 at 1585.058 kb on + strand, within Shewana3_1372 at 1585.106 kb on - strand, within Shewana3_1372 at 1585.113 kb on + strand, within Shewana3_1372 at 1585.117 kb on + strand, within Shewana3_1372 at 1585.141 kb on + strand, within Shewana3_1372 at 1585.156 kb on - strand, within Shewana3_1372 at 1585.227 kb on - strand, within Shewana3_1372 at 1585.365 kb on - strand, within Shewana3_1372
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,582,646 + Shewana3_1370 0.63 +0.7 1,582,750 + Shewana3_1370 0.68 +0.1 1,582,923 - Shewana3_1370 0.77 -0.6 1,582,925 + Shewana3_1370 0.77 -2.0 1,582,933 - Shewana3_1370 0.77 +0.4 1,583,039 + Shewana3_1370 0.82 -0.5 1,583,118 + Shewana3_1370 0.86 -2.6 1,583,118 + Shewana3_1370 0.86 +0.6 1,583,126 - Shewana3_1370 0.87 -0.8 1,583,126 - Shewana3_1370 0.87 -2.0 1,583,126 - Shewana3_1370 0.87 -0.7 1,583,260 + -0.0 1,583,530 - +0.4 1,583,584 + -0.8 1,583,594 + -1.5 1,583,675 + -1.0 1,583,680 + -1.6 1,583,688 - -0.0 1,583,714 + Shewana3_1371 0.12 -3.7 1,583,714 + Shewana3_1371 0.12 -1.6 1,584,066 + Shewana3_1371 0.56 -4.8 1,584,066 + Shewana3_1371 0.56 -4.8 1,584,122 + Shewana3_1371 0.64 -4.1 1,584,192 + Shewana3_1371 0.73 -4.4 1,584,285 + Shewana3_1371 0.84 -1.5 1,584,287 + Shewana3_1371 0.85 -1.6 1,584,392 + +0.6 1,584,419 + +0.8 1,584,738 - Shewana3_1372 0.19 -0.0 1,584,974 - Shewana3_1372 0.40 -1.1 1,585,058 + Shewana3_1372 0.48 -1.1 1,585,106 - Shewana3_1372 0.52 +1.0 1,585,113 + Shewana3_1372 0.53 -0.8 1,585,117 + Shewana3_1372 0.53 +1.0 1,585,141 + Shewana3_1372 0.55 -0.8 1,585,156 - Shewana3_1372 0.57 -1.3 1,585,227 - Shewana3_1372 0.63 +1.0 1,585,365 - Shewana3_1372 0.76 +0.4
Or see this region's nucleotide sequence