Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1302 and Shewana3_1303 overlap by 4 nucleotides Shewana3_1303 and Shewana3_1304 are separated by 15 nucleotides
Shewana3_1302: Shewana3_1302 - polysaccharide biosynthesis protein (RefSeq), at 1,516,864 to 1,517,859
_1302
Shewana3_1303: Shewana3_1303 - polysaccharide biosynthesis protein (RefSeq), at 1,517,856 to 1,518,998
_1303
Shewana3_1304: Shewana3_1304 - N-acetylneuraminate synthase (RefSeq), at 1,519,014 to 1,520,066
_1304
Position (kb)
1517
1518
1519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1516.860 kb on - strand at 1517.007 kb on + strand, within Shewana3_1302 at 1517.018 kb on - strand, within Shewana3_1302 at 1517.028 kb on - strand, within Shewana3_1302 at 1517.113 kb on + strand, within Shewana3_1302 at 1517.204 kb on + strand, within Shewana3_1302 at 1517.345 kb on + strand, within Shewana3_1302 at 1517.364 kb on + strand, within Shewana3_1302 at 1517.389 kb on - strand, within Shewana3_1302 at 1517.465 kb on + strand, within Shewana3_1302 at 1517.471 kb on + strand, within Shewana3_1302 at 1517.471 kb on + strand, within Shewana3_1302 at 1517.479 kb on - strand, within Shewana3_1302 at 1517.646 kb on + strand, within Shewana3_1302 at 1517.648 kb on + strand, within Shewana3_1302 at 1518.011 kb on - strand, within Shewana3_1303 at 1518.024 kb on + strand, within Shewana3_1303 at 1518.024 kb on + strand, within Shewana3_1303 at 1518.119 kb on + strand, within Shewana3_1303 at 1518.127 kb on - strand, within Shewana3_1303 at 1518.606 kb on + strand, within Shewana3_1303 at 1518.688 kb on + strand, within Shewana3_1303 at 1518.803 kb on - strand, within Shewana3_1303 at 1519.000 kb on - strand at 1519.394 kb on - strand, within Shewana3_1304 at 1519.495 kb on - strand, within Shewana3_1304 at 1519.498 kb on - strand, within Shewana3_1304 at 1519.592 kb on - strand, within Shewana3_1304 at 1519.836 kb on + strand, within Shewana3_1304 at 1519.975 kb on + strand at 1519.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,516,860 - -0.1 1,517,007 + Shewana3_1302 0.14 +0.8 1,517,018 - Shewana3_1302 0.15 -0.4 1,517,028 - Shewana3_1302 0.16 -0.9 1,517,113 + Shewana3_1302 0.25 +0.2 1,517,204 + Shewana3_1302 0.34 -0.4 1,517,345 + Shewana3_1302 0.48 +0.2 1,517,364 + Shewana3_1302 0.50 +0.1 1,517,389 - Shewana3_1302 0.53 -0.9 1,517,465 + Shewana3_1302 0.60 -0.1 1,517,471 + Shewana3_1302 0.61 +0.0 1,517,471 + Shewana3_1302 0.61 +0.3 1,517,479 - Shewana3_1302 0.62 +0.9 1,517,646 + Shewana3_1302 0.79 -0.7 1,517,648 + Shewana3_1302 0.79 +1.9 1,518,011 - Shewana3_1303 0.14 +0.9 1,518,024 + Shewana3_1303 0.15 -0.5 1,518,024 + Shewana3_1303 0.15 -1.0 1,518,119 + Shewana3_1303 0.23 -3.0 1,518,127 - Shewana3_1303 0.24 -0.7 1,518,606 + Shewana3_1303 0.66 -2.2 1,518,688 + Shewana3_1303 0.73 -1.1 1,518,803 - Shewana3_1303 0.83 +0.3 1,519,000 - -0.6 1,519,394 - Shewana3_1304 0.36 -0.8 1,519,495 - Shewana3_1304 0.46 -0.2 1,519,498 - Shewana3_1304 0.46 -0.0 1,519,592 - Shewana3_1304 0.55 -1.4 1,519,836 + Shewana3_1304 0.78 -0.7 1,519,975 + +0.9 1,519,975 + -1.2
Or see this region's nucleotide sequence