Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2484

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2483 and Echvi_2484 are separated by 10 nucleotidesEchvi_2484 and Echvi_2485 are separated by 296 nucleotides Echvi_2483: Echvi_2483 - Protein tyrosine/serine phosphatase, at 2,948,898 to 2,949,716 _2483 Echvi_2484: Echvi_2484 - TonB-dependent receptor, at 2,949,727 to 2,952,696 _2484 Echvi_2485: Echvi_2485 - AraC-type DNA-binding domain-containing proteins, at 2,952,993 to 2,954,081 _2485 Position (kb) 2949 2950 2951 2952 2953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2948.900 kb on - strandat 2948.910 kb on + strandat 2948.911 kb on - strandat 2948.989 kb on + strand, within Echvi_2483at 2948.990 kb on - strand, within Echvi_2483at 2949.025 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.048 kb on - strand, within Echvi_2483at 2949.048 kb on - strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.054 kb on - strand, within Echvi_2483at 2949.077 kb on - strand, within Echvi_2483at 2949.131 kb on - strand, within Echvi_2483at 2949.170 kb on - strand, within Echvi_2483at 2949.170 kb on - strand, within Echvi_2483at 2949.186 kb on - strand, within Echvi_2483at 2949.366 kb on - strand, within Echvi_2483at 2949.383 kb on + strand, within Echvi_2483at 2949.383 kb on + strand, within Echvi_2483at 2949.384 kb on - strand, within Echvi_2483at 2949.384 kb on - strand, within Echvi_2483at 2949.384 kb on - strand, within Echvi_2483at 2949.559 kb on + strand, within Echvi_2483at 2949.601 kb on - strand, within Echvi_2483at 2949.658 kb on + strandat 2949.659 kb on - strandat 2949.659 kb on - strandat 2949.659 kb on - strandat 2949.659 kb on - strandat 2949.662 kb on + strandat 2949.719 kb on + strandat 2949.720 kb on - strandat 2949.771 kb on - strandat 2949.812 kb on + strandat 2949.821 kb on + strandat 2949.822 kb on - strandat 2949.822 kb on - strandat 2949.867 kb on + strandat 2949.867 kb on + strandat 2949.868 kb on - strandat 2949.868 kb on - strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.927 kb on - strandat 2949.927 kb on - strandat 2949.929 kb on + strandat 2950.053 kb on + strandat 2950.054 kb on - strand, within Echvi_2484at 2950.257 kb on - strand, within Echvi_2484at 2950.311 kb on + strand, within Echvi_2484at 2950.312 kb on - strand, within Echvi_2484at 2950.317 kb on + strand, within Echvi_2484at 2950.505 kb on + strand, within Echvi_2484at 2950.522 kb on + strand, within Echvi_2484at 2950.523 kb on - strand, within Echvi_2484at 2950.540 kb on - strand, within Echvi_2484at 2950.541 kb on + strand, within Echvi_2484at 2950.541 kb on + strand, within Echvi_2484at 2950.541 kb on + strand, within Echvi_2484at 2950.542 kb on - strand, within Echvi_2484at 2950.542 kb on - strand, within Echvi_2484at 2950.542 kb on - strand, within Echvi_2484at 2950.574 kb on + strand, within Echvi_2484at 2950.574 kb on + strand, within Echvi_2484at 2950.574 kb on + strand, within Echvi_2484at 2950.575 kb on - strand, within Echvi_2484at 2950.575 kb on - strand, within Echvi_2484at 2950.700 kb on + strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.716 kb on - strand, within Echvi_2484at 2950.724 kb on + strand, within Echvi_2484at 2950.725 kb on - strand, within Echvi_2484at 2950.745 kb on + strand, within Echvi_2484at 2950.745 kb on + strand, within Echvi_2484at 2950.745 kb on + strand, within Echvi_2484at 2950.746 kb on - strand, within Echvi_2484at 2950.775 kb on + strand, within Echvi_2484at 2950.914 kb on + strand, within Echvi_2484at 2950.915 kb on - strand, within Echvi_2484at 2950.939 kb on + strand, within Echvi_2484at 2950.939 kb on + strand, within Echvi_2484at 2950.939 kb on + strand, within Echvi_2484at 2951.046 kb on + strand, within Echvi_2484at 2951.134 kb on + strand, within Echvi_2484at 2951.134 kb on + strand, within Echvi_2484at 2951.349 kb on + strand, within Echvi_2484at 2951.351 kb on + strand, within Echvi_2484at 2951.354 kb on + strand, within Echvi_2484at 2951.355 kb on - strand, within Echvi_2484at 2951.371 kb on + strand, within Echvi_2484at 2951.372 kb on - strand, within Echvi_2484at 2951.397 kb on + strand, within Echvi_2484at 2951.439 kb on - strand, within Echvi_2484at 2951.466 kb on + strand, within Echvi_2484at 2951.467 kb on - strand, within Echvi_2484at 2951.467 kb on - strand, within Echvi_2484at 2951.498 kb on + strand, within Echvi_2484at 2951.498 kb on + strand, within Echvi_2484at 2951.499 kb on - strand, within Echvi_2484at 2951.499 kb on - strand, within Echvi_2484at 2951.596 kb on - strand, within Echvi_2484at 2951.622 kb on - strand, within Echvi_2484at 2951.643 kb on + strand, within Echvi_2484at 2951.643 kb on + strand, within Echvi_2484at 2951.685 kb on + strand, within Echvi_2484at 2951.695 kb on + strand, within Echvi_2484at 2951.695 kb on + strand, within Echvi_2484at 2951.796 kb on + strand, within Echvi_2484at 2951.798 kb on + strand, within Echvi_2484at 2951.798 kb on + strand, within Echvi_2484at 2951.798 kb on + strand, within Echvi_2484at 2951.798 kb on + strand, within Echvi_2484at 2951.826 kb on - strand, within Echvi_2484at 2951.949 kb on - strand, within Echvi_2484at 2952.001 kb on - strand, within Echvi_2484at 2952.033 kb on - strand, within Echvi_2484at 2952.033 kb on - strand, within Echvi_2484at 2952.067 kb on + strand, within Echvi_2484at 2952.260 kb on + strand, within Echvi_2484at 2952.260 kb on + strand, within Echvi_2484at 2952.260 kb on + strand, within Echvi_2484at 2952.261 kb on - strand, within Echvi_2484at 2952.261 kb on - strand, within Echvi_2484at 2952.362 kb on + strand, within Echvi_2484at 2952.460 kb on + strandat 2952.460 kb on + strandat 2952.460 kb on + strandat 2952.460 kb on + strandat 2952.461 kb on - strandat 2952.465 kb on + strandat 2952.496 kb on + strandat 2952.553 kb on + strandat 2952.571 kb on + strandat 2952.571 kb on + strandat 2952.612 kb on + strandat 2952.613 kb on - strandat 2952.617 kb on + strandat 2952.617 kb on + strandat 2952.618 kb on - strandat 2952.618 kb on - strandat 2952.661 kb on + strandat 2952.744 kb on + strandat 2952.788 kb on + strandat 2952.914 kb on - strandat 2952.916 kb on - strandat 2952.938 kb on - strandat 2952.938 kb on - strandat 2952.938 kb on - strandat 2952.938 kb on - strandat 2952.968 kb on + strandat 2952.972 kb on + strandat 2952.973 kb on - strandat 2952.994 kb on + strandat 2953.061 kb on + strandat 2953.061 kb on + strandat 2953.061 kb on + strandat 2953.063 kb on + strandat 2953.064 kb on - strandat 2953.064 kb on - strandat 2953.070 kb on + strandat 2953.070 kb on + strandat 2953.155 kb on + strand, within Echvi_2485at 2953.156 kb on - strand, within Echvi_2485at 2953.156 kb on - strand, within Echvi_2485at 2953.174 kb on + strand, within Echvi_2485at 2953.174 kb on + strand, within Echvi_2485at 2953.174 kb on + strand, within Echvi_2485at 2953.175 kb on - strand, within Echvi_2485at 2953.175 kb on - strand, within Echvi_2485at 2953.206 kb on + strand, within Echvi_2485at 2953.207 kb on - strand, within Echvi_2485at 2953.232 kb on + strand, within Echvi_2485at 2953.233 kb on - strand, within Echvi_2485at 2953.278 kb on - strand, within Echvi_2485at 2953.278 kb on - strand, within Echvi_2485at 2953.328 kb on + strand, within Echvi_2485at 2953.400 kb on + strand, within Echvi_2485at 2953.400 kb on + strand, within Echvi_2485at 2953.401 kb on - strand, within Echvi_2485at 2953.422 kb on + strand, within Echvi_2485at 2953.423 kb on - strand, within Echvi_2485at 2953.423 kb on - strand, within Echvi_2485at 2953.423 kb on - strand, within Echvi_2485at 2953.423 kb on - strand, within Echvi_2485at 2953.483 kb on + strand, within Echvi_2485at 2953.484 kb on - strand, within Echvi_2485at 2953.484 kb on - strand, within Echvi_2485at 2953.490 kb on - strand, within Echvi_2485at 2953.490 kb on - strand, within Echvi_2485at 2953.558 kb on - strand, within Echvi_2485at 2953.568 kb on + strand, within Echvi_2485at 2953.568 kb on + strand, within Echvi_2485at 2953.568 kb on + strand, within Echvi_2485at 2953.568 kb on + strand, within Echvi_2485at 2953.645 kb on + strand, within Echvi_2485at 2953.646 kb on - strand, within Echvi_2485at 2953.654 kb on + strand, within Echvi_2485at 2953.654 kb on + strand, within Echvi_2485at 2953.663 kb on + strand, within Echvi_2485at 2953.664 kb on - strand, within Echvi_2485

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,948,900 - -1.2
2,948,910 + -0.7
2,948,911 - +0.2
2,948,989 + Echvi_2483 0.11 -0.0
2,948,990 - Echvi_2483 0.11 -0.2
2,949,025 + Echvi_2483 0.16 -0.9
2,949,047 + Echvi_2483 0.18 +0.3
2,949,047 + Echvi_2483 0.18 +0.1
2,949,047 + Echvi_2483 0.18 -0.0
2,949,047 + Echvi_2483 0.18 -0.6
2,949,048 - Echvi_2483 0.18 -0.2
2,949,048 - Echvi_2483 0.18 +0.3
2,949,049 + Echvi_2483 0.18 +0.1
2,949,049 + Echvi_2483 0.18 -0.5
2,949,049 + Echvi_2483 0.18 -1.8
2,949,049 + Echvi_2483 0.18 -0.8
2,949,049 + Echvi_2483 0.18 -0.6
2,949,049 + Echvi_2483 0.18 -0.1
2,949,049 + Echvi_2483 0.18 +0.8
2,949,050 - Echvi_2483 0.19 -1.8
2,949,050 - Echvi_2483 0.19 -0.3
2,949,050 - Echvi_2483 0.19 +0.9
2,949,050 - Echvi_2483 0.19 -2.2
2,949,054 - Echvi_2483 0.19 -0.4
2,949,077 - Echvi_2483 0.22 +2.6
2,949,131 - Echvi_2483 0.28 -0.2
2,949,170 - Echvi_2483 0.33 -0.4
2,949,170 - Echvi_2483 0.33 -0.0
2,949,186 - Echvi_2483 0.35 -1.5
2,949,366 - Echvi_2483 0.57 -1.0
2,949,383 + Echvi_2483 0.59 -1.9
2,949,383 + Echvi_2483 0.59 -1.2
2,949,384 - Echvi_2483 0.59 -0.1
2,949,384 - Echvi_2483 0.59 +0.5
2,949,384 - Echvi_2483 0.59 +0.8
2,949,559 + Echvi_2483 0.81 +0.7
2,949,601 - Echvi_2483 0.86 -2.1
2,949,658 + +0.8
2,949,659 - -0.7
2,949,659 - -0.3
2,949,659 - +0.5
2,949,659 - -0.5
2,949,662 + -0.4
2,949,719 + -0.2
2,949,720 - -0.2
2,949,771 - -0.1
2,949,812 + -0.7
2,949,821 + -0.4
2,949,822 - -1.4
2,949,822 - -1.9
2,949,867 + +1.6
2,949,867 + +0.5
2,949,868 - +0.8
2,949,868 - -0.9
2,949,926 + -0.1
2,949,926 + +0.9
2,949,926 + -0.1
2,949,926 + +0.1
2,949,926 + +0.1
2,949,926 + +0.3
2,949,926 + +4.2
2,949,927 - +0.4
2,949,927 - +0.2
2,949,929 + -1.0
2,950,053 + +0.1
2,950,054 - Echvi_2484 0.11 -0.7
2,950,257 - Echvi_2484 0.18 -0.2
2,950,311 + Echvi_2484 0.20 -0.5
2,950,312 - Echvi_2484 0.20 -2.3
2,950,317 + Echvi_2484 0.20 -1.2
2,950,505 + Echvi_2484 0.26 -0.4
2,950,522 + Echvi_2484 0.27 +1.0
2,950,523 - Echvi_2484 0.27 -1.5
2,950,540 - Echvi_2484 0.27 +0.5
2,950,541 + Echvi_2484 0.27 -0.1
2,950,541 + Echvi_2484 0.27 -1.0
2,950,541 + Echvi_2484 0.27 -1.4
2,950,542 - Echvi_2484 0.27 +0.6
2,950,542 - Echvi_2484 0.27 +0.5
2,950,542 - Echvi_2484 0.27 -0.6
2,950,574 + Echvi_2484 0.29 +0.9
2,950,574 + Echvi_2484 0.29 -0.4
2,950,574 + Echvi_2484 0.29 +0.4
2,950,575 - Echvi_2484 0.29 -0.5
2,950,575 - Echvi_2484 0.29 -0.7
2,950,700 + Echvi_2484 0.33 +0.0
2,950,701 - Echvi_2484 0.33 -1.1
2,950,701 - Echvi_2484 0.33 +0.4
2,950,701 - Echvi_2484 0.33 -1.4
2,950,701 - Echvi_2484 0.33 -0.6
2,950,716 - Echvi_2484 0.33 +0.2
2,950,724 + Echvi_2484 0.34 +1.1
2,950,725 - Echvi_2484 0.34 +0.4
2,950,745 + Echvi_2484 0.34 +0.9
2,950,745 + Echvi_2484 0.34 +0.0
2,950,745 + Echvi_2484 0.34 -0.8
2,950,746 - Echvi_2484 0.34 -0.4
2,950,775 + Echvi_2484 0.35 -1.4
2,950,914 + Echvi_2484 0.40 -1.5
2,950,915 - Echvi_2484 0.40 -1.1
2,950,939 + Echvi_2484 0.41 -0.6
2,950,939 + Echvi_2484 0.41 -0.3
2,950,939 + Echvi_2484 0.41 -1.0
2,951,046 + Echvi_2484 0.44 +0.4
2,951,134 + Echvi_2484 0.47 -0.4
2,951,134 + Echvi_2484 0.47 -1.2
2,951,349 + Echvi_2484 0.55 -0.4
2,951,351 + Echvi_2484 0.55 -0.1
2,951,354 + Echvi_2484 0.55 -1.7
2,951,355 - Echvi_2484 0.55 +0.3
2,951,371 + Echvi_2484 0.55 -1.1
2,951,372 - Echvi_2484 0.55 -0.7
2,951,397 + Echvi_2484 0.56 -0.9
2,951,439 - Echvi_2484 0.58 -1.4
2,951,466 + Echvi_2484 0.59 +0.6
2,951,467 - Echvi_2484 0.59 -0.1
2,951,467 - Echvi_2484 0.59 -0.3
2,951,498 + Echvi_2484 0.60 +0.6
2,951,498 + Echvi_2484 0.60 +0.4
2,951,499 - Echvi_2484 0.60 +0.2
2,951,499 - Echvi_2484 0.60 +0.6
2,951,596 - Echvi_2484 0.63 -1.4
2,951,622 - Echvi_2484 0.64 -0.7
2,951,643 + Echvi_2484 0.65 -0.9
2,951,643 + Echvi_2484 0.65 -0.3
2,951,685 + Echvi_2484 0.66 -0.1
2,951,695 + Echvi_2484 0.66 -0.5
2,951,695 + Echvi_2484 0.66 +0.6
2,951,796 + Echvi_2484 0.70 +0.1
2,951,798 + Echvi_2484 0.70 -0.0
2,951,798 + Echvi_2484 0.70 -0.5
2,951,798 + Echvi_2484 0.70 +0.2
2,951,798 + Echvi_2484 0.70 -0.1
2,951,826 - Echvi_2484 0.71 +0.2
2,951,949 - Echvi_2484 0.75 -0.3
2,952,001 - Echvi_2484 0.77 +0.5
2,952,033 - Echvi_2484 0.78 -0.7
2,952,033 - Echvi_2484 0.78 +0.0
2,952,067 + Echvi_2484 0.79 +0.5
2,952,260 + Echvi_2484 0.85 -0.9
2,952,260 + Echvi_2484 0.85 +1.3
2,952,260 + Echvi_2484 0.85 -0.3
2,952,261 - Echvi_2484 0.85 +0.0
2,952,261 - Echvi_2484 0.85 -0.8
2,952,362 + Echvi_2484 0.89 -1.8
2,952,460 + -1.1
2,952,460 + +1.1
2,952,460 + +0.4
2,952,460 + +0.3
2,952,461 - +0.6
2,952,465 + +0.9
2,952,496 + +0.7
2,952,553 + +1.5
2,952,571 + -1.1
2,952,571 + -0.2
2,952,612 + -0.2
2,952,613 - +0.1
2,952,617 + -1.4
2,952,617 + -0.3
2,952,618 - -0.8
2,952,618 - -0.6
2,952,661 + -0.5
2,952,744 + -1.4
2,952,788 + +1.6
2,952,914 - +0.2
2,952,916 - -0.9
2,952,938 - -3.0
2,952,938 - +0.5
2,952,938 - +0.1
2,952,938 - -1.1
2,952,968 + +0.2
2,952,972 + +0.6
2,952,973 - +0.2
2,952,994 + +0.6
2,953,061 + +0.4
2,953,061 + -2.1
2,953,061 + -1.1
2,953,063 + -0.7
2,953,064 - -0.5
2,953,064 - -0.8
2,953,070 + -0.6
2,953,070 + +2.1
2,953,155 + Echvi_2485 0.15 -0.2
2,953,156 - Echvi_2485 0.15 -0.1
2,953,156 - Echvi_2485 0.15 -1.0
2,953,174 + Echvi_2485 0.17 -0.4
2,953,174 + Echvi_2485 0.17 -1.7
2,953,174 + Echvi_2485 0.17 +0.7
2,953,175 - Echvi_2485 0.17 +1.9
2,953,175 - Echvi_2485 0.17 -0.3
2,953,206 + Echvi_2485 0.20 +0.8
2,953,207 - Echvi_2485 0.20 -4.1
2,953,232 + Echvi_2485 0.22 -0.7
2,953,233 - Echvi_2485 0.22 -1.6
2,953,278 - Echvi_2485 0.26 +0.4
2,953,278 - Echvi_2485 0.26 -0.5
2,953,328 + Echvi_2485 0.31 +0.1
2,953,400 + Echvi_2485 0.37 -0.1
2,953,400 + Echvi_2485 0.37 -1.2
2,953,401 - Echvi_2485 0.37 +0.3
2,953,422 + Echvi_2485 0.39 -0.4
2,953,423 - Echvi_2485 0.39 -1.1
2,953,423 - Echvi_2485 0.39 +1.4
2,953,423 - Echvi_2485 0.39 -1.4
2,953,423 - Echvi_2485 0.39 +0.5
2,953,483 + Echvi_2485 0.45 -1.5
2,953,484 - Echvi_2485 0.45 -0.3
2,953,484 - Echvi_2485 0.45 +0.2
2,953,490 - Echvi_2485 0.46 -0.7
2,953,490 - Echvi_2485 0.46 +1.5
2,953,558 - Echvi_2485 0.52 -1.1
2,953,568 + Echvi_2485 0.53 -0.6
2,953,568 + Echvi_2485 0.53 -0.3
2,953,568 + Echvi_2485 0.53 -1.1
2,953,568 + Echvi_2485 0.53 -0.6
2,953,645 + Echvi_2485 0.60 +0.6
2,953,646 - Echvi_2485 0.60 +0.3
2,953,654 + Echvi_2485 0.61 +0.1
2,953,654 + Echvi_2485 0.61 -1.1
2,953,663 + Echvi_2485 0.62 -0.9
2,953,664 - Echvi_2485 0.62 +0.3

Or see this region's nucleotide sequence