Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2483 and Echvi_2484 are separated by 10 nucleotides Echvi_2484 and Echvi_2485 are separated by 296 nucleotides
Echvi_2483: Echvi_2483 - Protein tyrosine/serine phosphatase, at 2,948,898 to 2,949,716
_2483
Echvi_2484: Echvi_2484 - TonB-dependent receptor, at 2,949,727 to 2,952,696
_2484
Echvi_2485: Echvi_2485 - AraC-type DNA-binding domain-containing proteins, at 2,952,993 to 2,954,081
_2485
Position (kb)
2949
2950
2951
2952
2953 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2948.900 kb on - strand at 2948.910 kb on + strand at 2948.911 kb on - strand at 2948.989 kb on + strand, within Echvi_2483 at 2948.990 kb on - strand, within Echvi_2483 at 2949.025 kb on + strand, within Echvi_2483 at 2949.047 kb on + strand, within Echvi_2483 at 2949.047 kb on + strand, within Echvi_2483 at 2949.047 kb on + strand, within Echvi_2483 at 2949.047 kb on + strand, within Echvi_2483 at 2949.048 kb on - strand, within Echvi_2483 at 2949.048 kb on - strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.049 kb on + strand, within Echvi_2483 at 2949.050 kb on - strand, within Echvi_2483 at 2949.050 kb on - strand, within Echvi_2483 at 2949.050 kb on - strand, within Echvi_2483 at 2949.050 kb on - strand, within Echvi_2483 at 2949.054 kb on - strand, within Echvi_2483 at 2949.077 kb on - strand, within Echvi_2483 at 2949.131 kb on - strand, within Echvi_2483 at 2949.170 kb on - strand, within Echvi_2483 at 2949.170 kb on - strand, within Echvi_2483 at 2949.186 kb on - strand, within Echvi_2483 at 2949.366 kb on - strand, within Echvi_2483 at 2949.383 kb on + strand, within Echvi_2483 at 2949.383 kb on + strand, within Echvi_2483 at 2949.384 kb on - strand, within Echvi_2483 at 2949.384 kb on - strand, within Echvi_2483 at 2949.384 kb on - strand, within Echvi_2483 at 2949.559 kb on + strand, within Echvi_2483 at 2949.601 kb on - strand, within Echvi_2483 at 2949.658 kb on + strand at 2949.659 kb on - strand at 2949.659 kb on - strand at 2949.659 kb on - strand at 2949.659 kb on - strand at 2949.662 kb on + strand at 2949.719 kb on + strand at 2949.720 kb on - strand at 2949.771 kb on - strand at 2949.812 kb on + strand at 2949.821 kb on + strand at 2949.822 kb on - strand at 2949.822 kb on - strand at 2949.867 kb on + strand at 2949.867 kb on + strand at 2949.868 kb on - strand at 2949.868 kb on - strand at 2949.926 kb on + strand at 2949.926 kb on + strand at 2949.926 kb on + strand at 2949.926 kb on + strand at 2949.926 kb on + strand at 2949.926 kb on + strand at 2949.926 kb on + strand at 2949.927 kb on - strand at 2949.927 kb on - strand at 2949.929 kb on + strand at 2950.053 kb on + strand at 2950.054 kb on - strand, within Echvi_2484 at 2950.257 kb on - strand, within Echvi_2484 at 2950.311 kb on + strand, within Echvi_2484 at 2950.312 kb on - strand, within Echvi_2484 at 2950.317 kb on + strand, within Echvi_2484 at 2950.505 kb on + strand, within Echvi_2484 at 2950.522 kb on + strand, within Echvi_2484 at 2950.523 kb on - strand, within Echvi_2484 at 2950.540 kb on - strand, within Echvi_2484 at 2950.541 kb on + strand, within Echvi_2484 at 2950.541 kb on + strand, within Echvi_2484 at 2950.541 kb on + strand, within Echvi_2484 at 2950.542 kb on - strand, within Echvi_2484 at 2950.542 kb on - strand, within Echvi_2484 at 2950.542 kb on - strand, within Echvi_2484 at 2950.574 kb on + strand, within Echvi_2484 at 2950.574 kb on + strand, within Echvi_2484 at 2950.574 kb on + strand, within Echvi_2484 at 2950.575 kb on - strand, within Echvi_2484 at 2950.575 kb on - strand, within Echvi_2484 at 2950.700 kb on + strand, within Echvi_2484 at 2950.701 kb on - strand, within Echvi_2484 at 2950.701 kb on - strand, within Echvi_2484 at 2950.701 kb on - strand, within Echvi_2484 at 2950.701 kb on - strand, within Echvi_2484 at 2950.716 kb on - strand, within Echvi_2484 at 2950.724 kb on + strand, within Echvi_2484 at 2950.725 kb on - strand, within Echvi_2484 at 2950.745 kb on + strand, within Echvi_2484 at 2950.745 kb on + strand, within Echvi_2484 at 2950.745 kb on + strand, within Echvi_2484 at 2950.746 kb on - strand, within Echvi_2484 at 2950.775 kb on + strand, within Echvi_2484 at 2950.914 kb on + strand, within Echvi_2484 at 2950.915 kb on - strand, within Echvi_2484 at 2950.939 kb on + strand, within Echvi_2484 at 2950.939 kb on + strand, within Echvi_2484 at 2950.939 kb on + strand, within Echvi_2484 at 2951.046 kb on + strand, within Echvi_2484 at 2951.134 kb on + strand, within Echvi_2484 at 2951.134 kb on + strand, within Echvi_2484 at 2951.349 kb on + strand, within Echvi_2484 at 2951.351 kb on + strand, within Echvi_2484 at 2951.354 kb on + strand, within Echvi_2484 at 2951.355 kb on - strand, within Echvi_2484 at 2951.371 kb on + strand, within Echvi_2484 at 2951.372 kb on - strand, within Echvi_2484 at 2951.397 kb on + strand, within Echvi_2484 at 2951.439 kb on - strand, within Echvi_2484 at 2951.466 kb on + strand, within Echvi_2484 at 2951.467 kb on - strand, within Echvi_2484 at 2951.467 kb on - strand, within Echvi_2484 at 2951.498 kb on + strand, within Echvi_2484 at 2951.498 kb on + strand, within Echvi_2484 at 2951.499 kb on - strand, within Echvi_2484 at 2951.499 kb on - strand, within Echvi_2484 at 2951.596 kb on - strand, within Echvi_2484 at 2951.622 kb on - strand, within Echvi_2484 at 2951.643 kb on + strand, within Echvi_2484 at 2951.643 kb on + strand, within Echvi_2484 at 2951.685 kb on + strand, within Echvi_2484 at 2951.695 kb on + strand, within Echvi_2484 at 2951.695 kb on + strand, within Echvi_2484 at 2951.796 kb on + strand, within Echvi_2484 at 2951.798 kb on + strand, within Echvi_2484 at 2951.798 kb on + strand, within Echvi_2484 at 2951.798 kb on + strand, within Echvi_2484 at 2951.798 kb on + strand, within Echvi_2484 at 2951.826 kb on - strand, within Echvi_2484 at 2951.949 kb on - strand, within Echvi_2484 at 2952.001 kb on - strand, within Echvi_2484 at 2952.033 kb on - strand, within Echvi_2484 at 2952.033 kb on - strand, within Echvi_2484 at 2952.067 kb on + strand, within Echvi_2484 at 2952.260 kb on + strand, within Echvi_2484 at 2952.260 kb on + strand, within Echvi_2484 at 2952.260 kb on + strand, within Echvi_2484 at 2952.261 kb on - strand, within Echvi_2484 at 2952.261 kb on - strand, within Echvi_2484 at 2952.362 kb on + strand, within Echvi_2484 at 2952.460 kb on + strand at 2952.460 kb on + strand at 2952.460 kb on + strand at 2952.460 kb on + strand at 2952.461 kb on - strand at 2952.465 kb on + strand at 2952.496 kb on + strand at 2952.553 kb on + strand at 2952.571 kb on + strand at 2952.571 kb on + strand at 2952.612 kb on + strand at 2952.613 kb on - strand at 2952.617 kb on + strand at 2952.617 kb on + strand at 2952.618 kb on - strand at 2952.618 kb on - strand at 2952.661 kb on + strand at 2952.744 kb on + strand at 2952.788 kb on + strand at 2952.914 kb on - strand at 2952.916 kb on - strand at 2952.938 kb on - strand at 2952.938 kb on - strand at 2952.938 kb on - strand at 2952.938 kb on - strand at 2952.968 kb on + strand at 2952.972 kb on + strand at 2952.973 kb on - strand at 2952.994 kb on + strand at 2953.061 kb on + strand at 2953.061 kb on + strand at 2953.061 kb on + strand at 2953.063 kb on + strand at 2953.064 kb on - strand at 2953.064 kb on - strand at 2953.070 kb on + strand at 2953.070 kb on + strand at 2953.155 kb on + strand, within Echvi_2485 at 2953.156 kb on - strand, within Echvi_2485 at 2953.156 kb on - strand, within Echvi_2485 at 2953.174 kb on + strand, within Echvi_2485 at 2953.174 kb on + strand, within Echvi_2485 at 2953.174 kb on + strand, within Echvi_2485 at 2953.175 kb on - strand, within Echvi_2485 at 2953.175 kb on - strand, within Echvi_2485 at 2953.206 kb on + strand, within Echvi_2485 at 2953.207 kb on - strand, within Echvi_2485 at 2953.232 kb on + strand, within Echvi_2485 at 2953.233 kb on - strand, within Echvi_2485 at 2953.278 kb on - strand, within Echvi_2485 at 2953.278 kb on - strand, within Echvi_2485 at 2953.328 kb on + strand, within Echvi_2485 at 2953.400 kb on + strand, within Echvi_2485 at 2953.400 kb on + strand, within Echvi_2485 at 2953.401 kb on - strand, within Echvi_2485 at 2953.422 kb on + strand, within Echvi_2485 at 2953.423 kb on - strand, within Echvi_2485 at 2953.423 kb on - strand, within Echvi_2485 at 2953.423 kb on - strand, within Echvi_2485 at 2953.423 kb on - strand, within Echvi_2485 at 2953.483 kb on + strand, within Echvi_2485 at 2953.484 kb on - strand, within Echvi_2485 at 2953.484 kb on - strand, within Echvi_2485 at 2953.490 kb on - strand, within Echvi_2485 at 2953.490 kb on - strand, within Echvi_2485 at 2953.558 kb on - strand, within Echvi_2485 at 2953.568 kb on + strand, within Echvi_2485 at 2953.568 kb on + strand, within Echvi_2485 at 2953.568 kb on + strand, within Echvi_2485 at 2953.568 kb on + strand, within Echvi_2485 at 2953.645 kb on + strand, within Echvi_2485 at 2953.646 kb on - strand, within Echvi_2485 at 2953.654 kb on + strand, within Echvi_2485 at 2953.654 kb on + strand, within Echvi_2485 at 2953.663 kb on + strand, within Echvi_2485 at 2953.664 kb on - strand, within Echvi_2485
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,948,900 - -1.2 2,948,910 + -0.7 2,948,911 - +0.2 2,948,989 + Echvi_2483 0.11 -0.0 2,948,990 - Echvi_2483 0.11 -0.2 2,949,025 + Echvi_2483 0.16 -0.9 2,949,047 + Echvi_2483 0.18 +0.3 2,949,047 + Echvi_2483 0.18 +0.1 2,949,047 + Echvi_2483 0.18 -0.0 2,949,047 + Echvi_2483 0.18 -0.6 2,949,048 - Echvi_2483 0.18 -0.2 2,949,048 - Echvi_2483 0.18 +0.3 2,949,049 + Echvi_2483 0.18 +0.1 2,949,049 + Echvi_2483 0.18 -0.5 2,949,049 + Echvi_2483 0.18 -1.8 2,949,049 + Echvi_2483 0.18 -0.8 2,949,049 + Echvi_2483 0.18 -0.6 2,949,049 + Echvi_2483 0.18 -0.1 2,949,049 + Echvi_2483 0.18 +0.8 2,949,050 - Echvi_2483 0.19 -1.8 2,949,050 - Echvi_2483 0.19 -0.3 2,949,050 - Echvi_2483 0.19 +0.9 2,949,050 - Echvi_2483 0.19 -2.2 2,949,054 - Echvi_2483 0.19 -0.4 2,949,077 - Echvi_2483 0.22 +2.6 2,949,131 - Echvi_2483 0.28 -0.2 2,949,170 - Echvi_2483 0.33 -0.4 2,949,170 - Echvi_2483 0.33 -0.0 2,949,186 - Echvi_2483 0.35 -1.5 2,949,366 - Echvi_2483 0.57 -1.0 2,949,383 + Echvi_2483 0.59 -1.9 2,949,383 + Echvi_2483 0.59 -1.2 2,949,384 - Echvi_2483 0.59 -0.1 2,949,384 - Echvi_2483 0.59 +0.5 2,949,384 - Echvi_2483 0.59 +0.8 2,949,559 + Echvi_2483 0.81 +0.7 2,949,601 - Echvi_2483 0.86 -2.1 2,949,658 + +0.8 2,949,659 - -0.7 2,949,659 - -0.3 2,949,659 - +0.5 2,949,659 - -0.5 2,949,662 + -0.4 2,949,719 + -0.2 2,949,720 - -0.2 2,949,771 - -0.1 2,949,812 + -0.7 2,949,821 + -0.4 2,949,822 - -1.4 2,949,822 - -1.9 2,949,867 + +1.6 2,949,867 + +0.5 2,949,868 - +0.8 2,949,868 - -0.9 2,949,926 + -0.1 2,949,926 + +0.9 2,949,926 + -0.1 2,949,926 + +0.1 2,949,926 + +0.1 2,949,926 + +0.3 2,949,926 + +4.2 2,949,927 - +0.4 2,949,927 - +0.2 2,949,929 + -1.0 2,950,053 + +0.1 2,950,054 - Echvi_2484 0.11 -0.7 2,950,257 - Echvi_2484 0.18 -0.2 2,950,311 + Echvi_2484 0.20 -0.5 2,950,312 - Echvi_2484 0.20 -2.3 2,950,317 + Echvi_2484 0.20 -1.2 2,950,505 + Echvi_2484 0.26 -0.4 2,950,522 + Echvi_2484 0.27 +1.0 2,950,523 - Echvi_2484 0.27 -1.5 2,950,540 - Echvi_2484 0.27 +0.5 2,950,541 + Echvi_2484 0.27 -0.1 2,950,541 + Echvi_2484 0.27 -1.0 2,950,541 + Echvi_2484 0.27 -1.4 2,950,542 - Echvi_2484 0.27 +0.6 2,950,542 - Echvi_2484 0.27 +0.5 2,950,542 - Echvi_2484 0.27 -0.6 2,950,574 + Echvi_2484 0.29 +0.9 2,950,574 + Echvi_2484 0.29 -0.4 2,950,574 + Echvi_2484 0.29 +0.4 2,950,575 - Echvi_2484 0.29 -0.5 2,950,575 - Echvi_2484 0.29 -0.7 2,950,700 + Echvi_2484 0.33 +0.0 2,950,701 - Echvi_2484 0.33 -1.1 2,950,701 - Echvi_2484 0.33 +0.4 2,950,701 - Echvi_2484 0.33 -1.4 2,950,701 - Echvi_2484 0.33 -0.6 2,950,716 - Echvi_2484 0.33 +0.2 2,950,724 + Echvi_2484 0.34 +1.1 2,950,725 - Echvi_2484 0.34 +0.4 2,950,745 + Echvi_2484 0.34 +0.9 2,950,745 + Echvi_2484 0.34 +0.0 2,950,745 + Echvi_2484 0.34 -0.8 2,950,746 - Echvi_2484 0.34 -0.4 2,950,775 + Echvi_2484 0.35 -1.4 2,950,914 + Echvi_2484 0.40 -1.5 2,950,915 - Echvi_2484 0.40 -1.1 2,950,939 + Echvi_2484 0.41 -0.6 2,950,939 + Echvi_2484 0.41 -0.3 2,950,939 + Echvi_2484 0.41 -1.0 2,951,046 + Echvi_2484 0.44 +0.4 2,951,134 + Echvi_2484 0.47 -0.4 2,951,134 + Echvi_2484 0.47 -1.2 2,951,349 + Echvi_2484 0.55 -0.4 2,951,351 + Echvi_2484 0.55 -0.1 2,951,354 + Echvi_2484 0.55 -1.7 2,951,355 - Echvi_2484 0.55 +0.3 2,951,371 + Echvi_2484 0.55 -1.1 2,951,372 - Echvi_2484 0.55 -0.7 2,951,397 + Echvi_2484 0.56 -0.9 2,951,439 - Echvi_2484 0.58 -1.4 2,951,466 + Echvi_2484 0.59 +0.6 2,951,467 - Echvi_2484 0.59 -0.1 2,951,467 - Echvi_2484 0.59 -0.3 2,951,498 + Echvi_2484 0.60 +0.6 2,951,498 + Echvi_2484 0.60 +0.4 2,951,499 - Echvi_2484 0.60 +0.2 2,951,499 - Echvi_2484 0.60 +0.6 2,951,596 - Echvi_2484 0.63 -1.4 2,951,622 - Echvi_2484 0.64 -0.7 2,951,643 + Echvi_2484 0.65 -0.9 2,951,643 + Echvi_2484 0.65 -0.3 2,951,685 + Echvi_2484 0.66 -0.1 2,951,695 + Echvi_2484 0.66 -0.5 2,951,695 + Echvi_2484 0.66 +0.6 2,951,796 + Echvi_2484 0.70 +0.1 2,951,798 + Echvi_2484 0.70 -0.0 2,951,798 + Echvi_2484 0.70 -0.5 2,951,798 + Echvi_2484 0.70 +0.2 2,951,798 + Echvi_2484 0.70 -0.1 2,951,826 - Echvi_2484 0.71 +0.2 2,951,949 - Echvi_2484 0.75 -0.3 2,952,001 - Echvi_2484 0.77 +0.5 2,952,033 - Echvi_2484 0.78 -0.7 2,952,033 - Echvi_2484 0.78 +0.0 2,952,067 + Echvi_2484 0.79 +0.5 2,952,260 + Echvi_2484 0.85 -0.9 2,952,260 + Echvi_2484 0.85 +1.3 2,952,260 + Echvi_2484 0.85 -0.3 2,952,261 - Echvi_2484 0.85 +0.0 2,952,261 - Echvi_2484 0.85 -0.8 2,952,362 + Echvi_2484 0.89 -1.8 2,952,460 + -1.1 2,952,460 + +1.1 2,952,460 + +0.4 2,952,460 + +0.3 2,952,461 - +0.6 2,952,465 + +0.9 2,952,496 + +0.7 2,952,553 + +1.5 2,952,571 + -1.1 2,952,571 + -0.2 2,952,612 + -0.2 2,952,613 - +0.1 2,952,617 + -1.4 2,952,617 + -0.3 2,952,618 - -0.8 2,952,618 - -0.6 2,952,661 + -0.5 2,952,744 + -1.4 2,952,788 + +1.6 2,952,914 - +0.2 2,952,916 - -0.9 2,952,938 - -3.0 2,952,938 - +0.5 2,952,938 - +0.1 2,952,938 - -1.1 2,952,968 + +0.2 2,952,972 + +0.6 2,952,973 - +0.2 2,952,994 + +0.6 2,953,061 + +0.4 2,953,061 + -2.1 2,953,061 + -1.1 2,953,063 + -0.7 2,953,064 - -0.5 2,953,064 - -0.8 2,953,070 + -0.6 2,953,070 + +2.1 2,953,155 + Echvi_2485 0.15 -0.2 2,953,156 - Echvi_2485 0.15 -0.1 2,953,156 - Echvi_2485 0.15 -1.0 2,953,174 + Echvi_2485 0.17 -0.4 2,953,174 + Echvi_2485 0.17 -1.7 2,953,174 + Echvi_2485 0.17 +0.7 2,953,175 - Echvi_2485 0.17 +1.9 2,953,175 - Echvi_2485 0.17 -0.3 2,953,206 + Echvi_2485 0.20 +0.8 2,953,207 - Echvi_2485 0.20 -4.1 2,953,232 + Echvi_2485 0.22 -0.7 2,953,233 - Echvi_2485 0.22 -1.6 2,953,278 - Echvi_2485 0.26 +0.4 2,953,278 - Echvi_2485 0.26 -0.5 2,953,328 + Echvi_2485 0.31 +0.1 2,953,400 + Echvi_2485 0.37 -0.1 2,953,400 + Echvi_2485 0.37 -1.2 2,953,401 - Echvi_2485 0.37 +0.3 2,953,422 + Echvi_2485 0.39 -0.4 2,953,423 - Echvi_2485 0.39 -1.1 2,953,423 - Echvi_2485 0.39 +1.4 2,953,423 - Echvi_2485 0.39 -1.4 2,953,423 - Echvi_2485 0.39 +0.5 2,953,483 + Echvi_2485 0.45 -1.5 2,953,484 - Echvi_2485 0.45 -0.3 2,953,484 - Echvi_2485 0.45 +0.2 2,953,490 - Echvi_2485 0.46 -0.7 2,953,490 - Echvi_2485 0.46 +1.5 2,953,558 - Echvi_2485 0.52 -1.1 2,953,568 + Echvi_2485 0.53 -0.6 2,953,568 + Echvi_2485 0.53 -0.3 2,953,568 + Echvi_2485 0.53 -1.1 2,953,568 + Echvi_2485 0.53 -0.6 2,953,645 + Echvi_2485 0.60 +0.6 2,953,646 - Echvi_2485 0.60 +0.3 2,953,654 + Echvi_2485 0.61 +0.1 2,953,654 + Echvi_2485 0.61 -1.1 2,953,663 + Echvi_2485 0.62 -0.9 2,953,664 - Echvi_2485 0.62 +0.3
Or see this region's nucleotide sequence