Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05027 and H281DRAFT_05028 are separated by 117 nucleotides H281DRAFT_05028 and H281DRAFT_05029 are separated by 160 nucleotides
H281DRAFT_05027: H281DRAFT_05027 - Microcystin degradation protein MlrC, contains DUF1485 domain, at 214,994 to 216,502
_05027
H281DRAFT_05028: H281DRAFT_05028 - Sugar phosphate permease, at 216,620 to 217,909
_05028
H281DRAFT_05029: H281DRAFT_05029 - DNA-binding transcriptional regulator, LysR family, at 218,070 to 219,038
_05029
Position (kb) 216
217
218 Strain fitness (log2 ratio) -1
0
1 at 215.857 kb on - strand, within H281DRAFT_05027 at 216.016 kb on - strand, within H281DRAFT_05027 at 216.090 kb on - strand, within H281DRAFT_05027 at 216.090 kb on - strand, within H281DRAFT_05027 at 217.057 kb on - strand, within H281DRAFT_05028 at 217.153 kb on - strand, within H281DRAFT_05028 at 217.171 kb on - strand, within H281DRAFT_05028 at 217.507 kb on - strand, within H281DRAFT_05028 at 217.509 kb on + strand, within H281DRAFT_05028 at 217.510 kb on - strand, within H281DRAFT_05028 at 217.567 kb on - strand, within H281DRAFT_05028 at 217.815 kb on + strand at 217.816 kb on - strand at 217.978 kb on + strand at 218.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 215,857 - H281DRAFT_05027 0.57 -1.2 216,016 - H281DRAFT_05027 0.68 +0.2 216,090 - H281DRAFT_05027 0.73 -0.1 216,090 - H281DRAFT_05027 0.73 +0.9 217,057 - H281DRAFT_05028 0.34 +0.5 217,153 - H281DRAFT_05028 0.41 +0.1 217,171 - H281DRAFT_05028 0.43 -0.8 217,507 - H281DRAFT_05028 0.69 -0.7 217,509 + H281DRAFT_05028 0.69 -0.6 217,510 - H281DRAFT_05028 0.69 +0.8 217,567 - H281DRAFT_05028 0.73 -0.4 217,815 + +0.7 217,816 - +0.5 217,978 + -0.3 218,101 - +0.9
Or see this region's nucleotide sequence