Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19005

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18995 and AO353_19000 overlap by 1 nucleotidesAO353_19000 and AO353_19005 are separated by 10 nucleotidesAO353_19005 and AO353_19010 are separated by 58 nucleotidesAO353_19010 and AO353_19015 are separated by 103 nucleotides AO353_18995: AO353_18995 - ABC transporter permease, at 4,172,633 to 4,175,137 _18995 AO353_19000: AO353_19000 - ABC transporter, at 4,175,137 to 4,175,823 _19000 AO353_19005: AO353_19005 - esterase, at 4,175,834 to 4,176,439 _19005 AO353_19010: AO353_19010 - hypothetical protein, at 4,176,498 to 4,176,791 _19010 AO353_19015: AO353_19015 - hypothetical protein, at 4,176,895 to 4,177,863 _19015 Position (kb) 4175 4176 4177Strain fitness (log2 ratio) -1 0 1 2 3at 4175.004 kb on + strandat 4175.005 kb on - strandat 4175.164 kb on + strandat 4175.165 kb on - strandat 4175.254 kb on - strand, within AO353_19000at 4175.292 kb on + strand, within AO353_19000at 4175.292 kb on + strand, within AO353_19000at 4175.292 kb on + strand, within AO353_19000at 4175.293 kb on - strand, within AO353_19000at 4175.314 kb on - strand, within AO353_19000at 4175.790 kb on + strandat 4175.791 kb on - strandat 4175.899 kb on + strand, within AO353_19005at 4175.899 kb on + strand, within AO353_19005at 4175.920 kb on + strand, within AO353_19005at 4175.920 kb on + strand, within AO353_19005at 4175.921 kb on - strand, within AO353_19005at 4175.923 kb on + strand, within AO353_19005at 4175.923 kb on + strand, within AO353_19005at 4175.923 kb on + strand, within AO353_19005at 4175.924 kb on - strand, within AO353_19005at 4175.924 kb on - strand, within AO353_19005at 4176.085 kb on + strandat 4176.085 kb on + strand, within AO353_19005at 4176.085 kb on + strand, within AO353_19005at 4176.085 kb on + strand, within AO353_19005at 4176.085 kb on + strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.275 kb on + strand, within AO353_19005at 4176.275 kb on + strand, within AO353_19005at 4176.276 kb on - strand, within AO353_19005at 4176.276 kb on - strand, within AO353_19005at 4176.276 kb on - strand, within AO353_19005at 4176.418 kb on + strandat 4176.418 kb on + strandat 4176.418 kb on + strandat 4176.424 kb on - strandat 4176.424 kb on - strandat 4176.424 kb on - strandat 4176.435 kb on + strandat 4176.436 kb on - strandat 4176.449 kb on - strandat 4176.789 kb on + strandat 4176.790 kb on - strandat 4176.790 kb on - strandat 4176.805 kb on + strandat 4176.806 kb on - strandat 4176.806 kb on - strandat 4176.846 kb on + strandat 4176.847 kb on - strandat 4176.847 kb on - strandat 4176.847 kb on - strandat 4176.847 kb on - strandat 4176.878 kb on + strandat 4176.878 kb on + strandat 4176.878 kb on + strandat 4176.878 kb on + strandat 4176.879 kb on - strandat 4176.879 kb on - strandat 4176.879 kb on - strandat 4176.879 kb on - strandat 4176.925 kb on + strandat 4176.926 kb on - strandat 4176.926 kb on - strandat 4176.951 kb on - strandat 4176.984 kb on - strandat 4176.984 kb on - strandat 4177.002 kb on + strand, within AO353_19015at 4177.002 kb on + strand, within AO353_19015at 4177.036 kb on + strand, within AO353_19015at 4177.036 kb on + strand, within AO353_19015at 4177.036 kb on + strand, within AO353_19015at 4177.036 kb on + strand, within AO353_19015at 4177.037 kb on - strand, within AO353_19015at 4177.037 kb on - strand, within AO353_19015at 4177.037 kb on - strand, within AO353_19015at 4177.037 kb on - strand, within AO353_19015at 4177.037 kb on - strand, within AO353_19015at 4177.069 kb on + strand, within AO353_19015at 4177.069 kb on + strand, within AO353_19015at 4177.069 kb on + strand, within AO353_19015at 4177.069 kb on + strand, within AO353_19015at 4177.069 kb on + strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.070 kb on - strand, within AO353_19015at 4177.082 kb on - strand, within AO353_19015at 4177.148 kb on + strand, within AO353_19015at 4177.148 kb on + strand, within AO353_19015at 4177.148 kb on + strand, within AO353_19015at 4177.149 kb on - strand, within AO353_19015at 4177.149 kb on - strand, within AO353_19015at 4177.222 kb on + strand, within AO353_19015at 4177.222 kb on + strand, within AO353_19015at 4177.222 kb on + strand, within AO353_19015at 4177.222 kb on + strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.223 kb on - strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.225 kb on + strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.226 kb on - strand, within AO353_19015at 4177.228 kb on + strand, within AO353_19015at 4177.229 kb on - strand, within AO353_19015at 4177.252 kb on + strand, within AO353_19015at 4177.252 kb on + strand, within AO353_19015at 4177.252 kb on + strand, within AO353_19015at 4177.252 kb on + strand, within AO353_19015at 4177.252 kb on + strandat 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.253 kb on - strand, within AO353_19015at 4177.270 kb on - strand, within AO353_19015

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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4,175,004 + -0.1
4,175,005 - +0.8
4,175,164 + -1.5
4,175,165 - +1.2
4,175,254 - AO353_19000 0.17 +0.5
4,175,292 + AO353_19000 0.23 -1.5
4,175,292 + AO353_19000 0.23 -0.3
4,175,292 + AO353_19000 0.23 -0.1
4,175,293 - AO353_19000 0.23 +0.5
4,175,314 - AO353_19000 0.26 +0.8
4,175,790 + +0.5
4,175,791 - +0.5
4,175,899 + AO353_19005 0.11 +0.5
4,175,899 + AO353_19005 0.11 +0.8
4,175,920 + AO353_19005 0.14 -0.1
4,175,920 + AO353_19005 0.14 +2.1
4,175,921 - AO353_19005 0.14 +2.5
4,175,923 + AO353_19005 0.15 -1.1
4,175,923 + AO353_19005 0.15 +0.3
4,175,923 + AO353_19005 0.15 +0.4
4,175,924 - AO353_19005 0.15 +0.4
4,175,924 - AO353_19005 0.15 +0.7
4,176,085 + +0.3
4,176,085 + AO353_19005 0.41 +2.3
4,176,085 + AO353_19005 0.41 +1.6
4,176,085 + AO353_19005 0.41 -0.7
4,176,085 + AO353_19005 0.41 +0.6
4,176,086 - AO353_19005 0.42 -0.7
4,176,086 - AO353_19005 0.42 -0.1
4,176,086 - AO353_19005 0.42 +1.7
4,176,086 - AO353_19005 0.42 +0.1
4,176,086 - AO353_19005 0.42 +0.7
4,176,240 - AO353_19005 0.67 +0.7
4,176,240 - AO353_19005 0.67 +3.1
4,176,240 - AO353_19005 0.67 +0.5
4,176,240 - AO353_19005 0.67 +0.9
4,176,240 - AO353_19005 0.67 +0.8
4,176,275 + AO353_19005 0.73 +0.6
4,176,275 + AO353_19005 0.73 +0.6
4,176,276 - AO353_19005 0.73 +0.3
4,176,276 - AO353_19005 0.73 +1.5
4,176,276 - AO353_19005 0.73 +1.1
4,176,418 + +1.0
4,176,418 + +1.1
4,176,418 + +0.8
4,176,424 - +0.9
4,176,424 - -0.4
4,176,424 - +0.5
4,176,435 + +0.4
4,176,436 - +1.2
4,176,449 - +1.1
4,176,789 + -0.1
4,176,790 - +0.8
4,176,790 - +0.7
4,176,805 + -0.6
4,176,806 - +0.3
4,176,806 - -0.3
4,176,846 + +0.0
4,176,847 - +0.9
4,176,847 - +0.9
4,176,847 - +1.5
4,176,847 - +1.1
4,176,878 + +0.4
4,176,878 + +1.6
4,176,878 + +1.3
4,176,878 + +1.6
4,176,879 - +1.9
4,176,879 - +2.4
4,176,879 - +0.4
4,176,879 - +1.3
4,176,925 + +1.1
4,176,926 - +1.0
4,176,926 - +2.4
4,176,951 - +2.1
4,176,984 - +1.6
4,176,984 - +3.2
4,177,002 + AO353_19015 0.11 +1.8
4,177,002 + AO353_19015 0.11 +1.2
4,177,036 + AO353_19015 0.15 +2.3
4,177,036 + AO353_19015 0.15 +1.3
4,177,036 + AO353_19015 0.15 +1.1
4,177,036 + AO353_19015 0.15 +0.8
4,177,037 - AO353_19015 0.15 +2.0
4,177,037 - AO353_19015 0.15 +1.5
4,177,037 - AO353_19015 0.15 +2.3
4,177,037 - AO353_19015 0.15 +1.9
4,177,037 - AO353_19015 0.15 +2.4
4,177,069 + AO353_19015 0.18 +2.1
4,177,069 + AO353_19015 0.18 +0.3
4,177,069 + AO353_19015 0.18 +1.9
4,177,069 + AO353_19015 0.18 +1.8
4,177,069 + AO353_19015 0.18 +2.8
4,177,070 - AO353_19015 0.18 +2.6
4,177,070 - AO353_19015 0.18 +1.5
4,177,070 - AO353_19015 0.18 +1.7
4,177,070 - AO353_19015 0.18 +1.5
4,177,070 - AO353_19015 0.18 +2.7
4,177,070 - AO353_19015 0.18 +2.5
4,177,070 - AO353_19015 0.18 +2.3
4,177,070 - AO353_19015 0.18 +2.0
4,177,070 - AO353_19015 0.18 +2.2
4,177,070 - AO353_19015 0.18 +1.7
4,177,070 - AO353_19015 0.18 +1.7
4,177,082 - AO353_19015 0.19 +1.7
4,177,148 + AO353_19015 0.26 +1.8
4,177,148 + AO353_19015 0.26 +0.7
4,177,148 + AO353_19015 0.26 -0.0
4,177,149 - AO353_19015 0.26 +0.0
4,177,149 - AO353_19015 0.26 +1.3
4,177,222 + AO353_19015 0.34 +1.1
4,177,222 + AO353_19015 0.34 +1.9
4,177,222 + AO353_19015 0.34 +1.9
4,177,222 + AO353_19015 0.34 +0.9
4,177,223 - AO353_19015 0.34 +1.8
4,177,223 - AO353_19015 0.34 +2.3
4,177,223 - AO353_19015 0.34 +1.9
4,177,223 - AO353_19015 0.34 +1.3
4,177,223 - AO353_19015 0.34 +0.7
4,177,223 - AO353_19015 0.34 +1.6
4,177,223 - AO353_19015 0.34 +1.5
4,177,223 - AO353_19015 0.34 +2.0
4,177,223 - AO353_19015 0.34 +1.3
4,177,223 - AO353_19015 0.34 +1.2
4,177,225 + AO353_19015 0.34 +1.9
4,177,225 + AO353_19015 0.34 +1.9
4,177,225 + AO353_19015 0.34 +1.1
4,177,225 + AO353_19015 0.34 +2.3
4,177,225 + AO353_19015 0.34 +1.6
4,177,225 + AO353_19015 0.34 +2.2
4,177,225 + AO353_19015 0.34 +1.6
4,177,225 + AO353_19015 0.34 +1.7
4,177,225 + AO353_19015 0.34 +2.1
4,177,226 - AO353_19015 0.34 +0.6
4,177,226 - AO353_19015 0.34 +1.6
4,177,226 - AO353_19015 0.34 +2.3
4,177,226 - AO353_19015 0.34 +2.0
4,177,226 - AO353_19015 0.34 +1.7
4,177,226 - AO353_19015 0.34 +1.9
4,177,226 - AO353_19015 0.34 +1.6
4,177,226 - AO353_19015 0.34 +2.0
4,177,226 - AO353_19015 0.34 +2.0
4,177,226 - AO353_19015 0.34 +2.2
4,177,226 - AO353_19015 0.34 +1.8
4,177,226 - AO353_19015 0.34 +1.5
4,177,226 - AO353_19015 0.34 +1.3
4,177,228 + AO353_19015 0.34 +1.8
4,177,229 - AO353_19015 0.34 +1.9
4,177,252 + AO353_19015 0.37 +2.1
4,177,252 + AO353_19015 0.37 +1.2
4,177,252 + AO353_19015 0.37 +1.3
4,177,252 + AO353_19015 0.37 +1.7
4,177,252 + +2.7
4,177,253 - AO353_19015 0.37 +1.5
4,177,253 - AO353_19015 0.37 +0.1
4,177,253 - AO353_19015 0.37 -1.3
4,177,253 - AO353_19015 0.37 +1.9
4,177,253 - AO353_19015 0.37 +2.5
4,177,253 - AO353_19015 0.37 +0.9
4,177,253 - AO353_19015 0.37 +1.8
4,177,253 - AO353_19015 0.37 +1.6
4,177,253 - AO353_19015 0.37 +0.4
4,177,253 - AO353_19015 0.37 +0.9
4,177,253 - AO353_19015 0.37 +1.6
4,177,253 - AO353_19015 0.37 -0.3
4,177,270 - AO353_19015 0.39 +2.2

Or see this region's nucleotide sequence