Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_327

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_326 and PfGW456L13_327 are separated by 57 nucleotidesPfGW456L13_327 and PfGW456L13_328 are separated by 319 nucleotidesPfGW456L13_328 and PfGW456L13_329 overlap by 4 nucleotides PfGW456L13_326 - Urocanate hydratase (EC 4.2.1.49) (from data), at 381,509 to 383,191 _326 PfGW456L13_327 - hypothetical protein, at 383,249 to 383,368 _327 PfGW456L13_328 - Conserved hypothetical protein (perhaps related to histidine degradation), at 383,688 to 384,257 _328 PfGW456L13_329 - Histidine utilization repressor, at 384,254 to 385,003 _329 Position (kb) 383 384Strain fitness (log2 ratio) -2 -1 0 1at 382.500 kb on + strand, within PfGW456L13_326at 382.500 kb on + strand, within PfGW456L13_326at 382.500 kb on + strand, within PfGW456L13_326at 382.500 kb on + strand, within PfGW456L13_326at 382.501 kb on - strand, within PfGW456L13_326at 382.501 kb on - strand, within PfGW456L13_326at 382.501 kb on - strand, within PfGW456L13_326at 382.501 kb on - strand, within PfGW456L13_326at 382.501 kb on - strand, within PfGW456L13_326at 382.704 kb on + strand, within PfGW456L13_326at 382.704 kb on + strand, within PfGW456L13_326at 382.704 kb on + strand, within PfGW456L13_326at 382.704 kb on + strand, within PfGW456L13_326at 382.704 kb on + strand, within PfGW456L13_326at 382.704 kb on + strand, within PfGW456L13_326at 382.705 kb on - strand, within PfGW456L13_326at 382.705 kb on - strand, within PfGW456L13_326at 382.705 kb on - strand, within PfGW456L13_326at 382.705 kb on - strand, within PfGW456L13_326at 382.705 kb on - strand, within PfGW456L13_326at 382.705 kb on - strand, within PfGW456L13_326at 382.737 kb on + strand, within PfGW456L13_326at 382.737 kb on + strand, within PfGW456L13_326at 382.737 kb on + strand, within PfGW456L13_326at 382.738 kb on - strand, within PfGW456L13_326at 382.770 kb on + strand, within PfGW456L13_326at 382.770 kb on + strand, within PfGW456L13_326at 382.770 kb on + strand, within PfGW456L13_326at 382.770 kb on + strand, within PfGW456L13_326at 382.770 kb on + strand, within PfGW456L13_326at 382.770 kb on + strand, within PfGW456L13_326at 382.771 kb on - strand, within PfGW456L13_326at 382.771 kb on - strand, within PfGW456L13_326at 382.771 kb on - strand, within PfGW456L13_326at 382.771 kb on - strand, within PfGW456L13_326at 382.771 kb on - strand, within PfGW456L13_326at 382.771 kb on - strand, within PfGW456L13_326at 382.800 kb on + strand, within PfGW456L13_326at 382.800 kb on + strand, within PfGW456L13_326at 382.800 kb on + strand, within PfGW456L13_326at 382.800 kb on + strand, within PfGW456L13_326at 382.801 kb on - strand, within PfGW456L13_326at 382.801 kb on - strand, within PfGW456L13_326at 382.801 kb on - strand, within PfGW456L13_326at 382.801 kb on - strand, within PfGW456L13_326at 382.801 kb on - strand, within PfGW456L13_326at 382.801 kb on - strand, within PfGW456L13_326at 382.992 kb on + strand, within PfGW456L13_326at 382.993 kb on - strand, within PfGW456L13_326at 383.005 kb on + strand, within PfGW456L13_326at 383.031 kb on + strandat 383.031 kb on + strandat 383.031 kb on + strandat 383.032 kb on - strandat 383.048 kb on - strandat 383.173 kb on + strandat 383.173 kb on + strandat 383.174 kb on - strandat 383.174 kb on - strandat 383.174 kb on - strandat 383.174 kb on - strandat 383.179 kb on + strandat 383.179 kb on + strandat 383.180 kb on - strandat 383.306 kb on + strand, within PfGW456L13_327at 383.306 kb on + strand, within PfGW456L13_327at 383.307 kb on - strand, within PfGW456L13_327at 383.312 kb on + strand, within PfGW456L13_327at 383.313 kb on - strand, within PfGW456L13_327at 383.320 kb on + strand, within PfGW456L13_327at 383.321 kb on - strand, within PfGW456L13_327at 383.326 kb on + strand, within PfGW456L13_327at 383.326 kb on + strand, within PfGW456L13_327at 383.330 kb on + strand, within PfGW456L13_327at 383.331 kb on - strand, within PfGW456L13_327at 383.472 kb on - strandat 383.620 kb on + strandat 383.620 kb on + strandat 383.620 kb on + strandat 383.620 kb on + strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.621 kb on - strandat 383.651 kb on + strandat 383.673 kb on + strandat 383.673 kb on + strandat 383.674 kb on - strandat 383.674 kb on - strandat 383.686 kb on + strandat 383.686 kb on + strandat 383.686 kb on + strandat 383.686 kb on + strandat 383.686 kb on + strandat 383.686 kb on + strandat 383.686 kb on + strandat 383.687 kb on - strandat 383.687 kb on - strandat 383.687 kb on - strandat 383.831 kb on + strand, within PfGW456L13_328at 383.920 kb on + strand, within PfGW456L13_328at 383.920 kb on + strand, within PfGW456L13_328at 383.920 kb on + strand, within PfGW456L13_328at 383.921 kb on - strand, within PfGW456L13_328at 384.237 kb on + strandat 384.238 kb on - strandat 384.247 kb on - strandat 384.247 kb on - strandat 384.259 kb on + strandat 384.259 kb on + strandat 384.259 kb on + strandat 384.259 kb on + strandat 384.260 kb on - strandat 384.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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382,500 + PfGW456L13_326 0.59 +0.1
382,500 + PfGW456L13_326 0.59 +0.5
382,500 + PfGW456L13_326 0.59 -0.2
382,500 + PfGW456L13_326 0.59 +0.2
382,501 - PfGW456L13_326 0.59 +0.2
382,501 - PfGW456L13_326 0.59 +0.8
382,501 - PfGW456L13_326 0.59 -0.2
382,501 - PfGW456L13_326 0.59 -1.5
382,501 - PfGW456L13_326 0.59 +1.5
382,704 + PfGW456L13_326 0.71 -0.1
382,704 + PfGW456L13_326 0.71 +0.4
382,704 + PfGW456L13_326 0.71 -0.2
382,704 + PfGW456L13_326 0.71 +0.2
382,704 + PfGW456L13_326 0.71 +0.3
382,704 + PfGW456L13_326 0.71 -0.2
382,705 - PfGW456L13_326 0.71 +0.5
382,705 - PfGW456L13_326 0.71 +0.2
382,705 - PfGW456L13_326 0.71 -1.0
382,705 - PfGW456L13_326 0.71 -0.5
382,705 - PfGW456L13_326 0.71 -0.0
382,705 - PfGW456L13_326 0.71 -0.0
382,737 + PfGW456L13_326 0.73 -0.5
382,737 + PfGW456L13_326 0.73 +0.5
382,737 + PfGW456L13_326 0.73 -0.9
382,738 - PfGW456L13_326 0.73 -0.8
382,770 + PfGW456L13_326 0.75 -0.3
382,770 + PfGW456L13_326 0.75 -0.4
382,770 + PfGW456L13_326 0.75 -0.2
382,770 + PfGW456L13_326 0.75 +1.3
382,770 + PfGW456L13_326 0.75 -1.8
382,770 + PfGW456L13_326 0.75 +0.0
382,771 - PfGW456L13_326 0.75 -0.5
382,771 - PfGW456L13_326 0.75 -0.2
382,771 - PfGW456L13_326 0.75 -0.1
382,771 - PfGW456L13_326 0.75 +0.8
382,771 - PfGW456L13_326 0.75 +0.4
382,771 - PfGW456L13_326 0.75 +0.7
382,800 + PfGW456L13_326 0.77 -0.6
382,800 + PfGW456L13_326 0.77 +0.9
382,800 + PfGW456L13_326 0.77 -0.2
382,800 + PfGW456L13_326 0.77 -0.1
382,801 - PfGW456L13_326 0.77 +0.5
382,801 - PfGW456L13_326 0.77 -0.0
382,801 - PfGW456L13_326 0.77 -0.2
382,801 - PfGW456L13_326 0.77 -0.8
382,801 - PfGW456L13_326 0.77 +0.8
382,801 - PfGW456L13_326 0.77 -0.7
382,992 + PfGW456L13_326 0.88 -1.6
382,993 - PfGW456L13_326 0.88 +0.1
383,005 + PfGW456L13_326 0.89 -0.0
383,031 + -0.1
383,031 + -0.4
383,031 + -0.8
383,032 - +0.2
383,048 - +0.3
383,173 + -0.3
383,173 + +0.6
383,174 - -0.4
383,174 - -0.8
383,174 - -0.1
383,174 - +1.0
383,179 + +0.3
383,179 + +0.5
383,180 - +0.8
383,306 + PfGW456L13_327 0.47 -1.5
383,306 + PfGW456L13_327 0.47 -0.5
383,307 - PfGW456L13_327 0.48 +0.0
383,312 + PfGW456L13_327 0.53 -0.2
383,313 - PfGW456L13_327 0.53 -0.5
383,320 + PfGW456L13_327 0.59 -1.4
383,321 - PfGW456L13_327 0.60 -1.4
383,326 + PfGW456L13_327 0.64 -0.4
383,326 + PfGW456L13_327 0.64 -0.2
383,330 + PfGW456L13_327 0.68 +0.1
383,331 - PfGW456L13_327 0.68 -2.1
383,472 - -2.5
383,620 + +0.6
383,620 + +0.5
383,620 + +0.3
383,620 + +0.2
383,621 - +0.2
383,621 - +0.3
383,621 - +0.8
383,621 - +0.9
383,621 - +0.3
383,651 + +0.4
383,673 + +1.1
383,673 + -0.5
383,674 - +0.5
383,674 - -0.5
383,686 + -0.2
383,686 + -0.1
383,686 + +0.1
383,686 + +0.4
383,686 + -0.2
383,686 + +0.9
383,686 + +1.1
383,687 - -0.3
383,687 - +0.6
383,687 - -0.2
383,831 + PfGW456L13_328 0.25 -0.4
383,920 + PfGW456L13_328 0.41 +0.5
383,920 + PfGW456L13_328 0.41 -0.4
383,920 + PfGW456L13_328 0.41 -0.8
383,921 - PfGW456L13_328 0.41 +1.0
384,237 + -0.6
384,238 - +0.2
384,247 - +0.4
384,247 - +1.2
384,259 + -0.4
384,259 + +0.2
384,259 + -0.1
384,259 + +0.0
384,260 - -0.4
384,260 - -0.2

Or see this region's nucleotide sequence