Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_240

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_239 and PfGW456L13_240 are separated by 19 nucleotidesPfGW456L13_240 and PfGW456L13_241 overlap by 4 nucleotidesPfGW456L13_241 and PfGW456L13_242 overlap by 20 nucleotides PfGW456L13_239 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 282,385 to 284,064 _239 PfGW456L13_240 - FIG143263: Glycosyl transferase, at 284,084 to 284,791 _240 PfGW456L13_241 - Lysophospholipid acyltransferase, at 284,788 to 285,729 _241 PfGW456L13_242 - Putative histidine ammonia-lyase protein, at 285,710 to 287,254 _242 Position (kb) 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1at 283.297 kb on + strand, within PfGW456L13_239at 283.297 kb on + strand, within PfGW456L13_239at 283.297 kb on + strand, within PfGW456L13_239at 283.298 kb on - strand, within PfGW456L13_239at 283.301 kb on + strand, within PfGW456L13_239at 283.795 kb on + strand, within PfGW456L13_239at 283.796 kb on - strand, within PfGW456L13_239at 283.796 kb on - strand, within PfGW456L13_239at 283.969 kb on + strandat 283.993 kb on + strandat 283.994 kb on - strandat 283.994 kb on - strandat 284.063 kb on - strandat 284.087 kb on + strandat 284.087 kb on + strandat 284.087 kb on + strandat 284.087 kb on + strandat 284.087 kb on + strandat 284.088 kb on - strandat 284.088 kb on - strandat 284.088 kb on - strandat 284.414 kb on + strand, within PfGW456L13_240at 284.444 kb on + strand, within PfGW456L13_240at 284.445 kb on - strand, within PfGW456L13_240at 284.445 kb on - strand, within PfGW456L13_240at 284.453 kb on + strand, within PfGW456L13_240at 284.889 kb on - strand, within PfGW456L13_241at 284.905 kb on + strand, within PfGW456L13_241at 284.906 kb on - strand, within PfGW456L13_241at 284.965 kb on + strand, within PfGW456L13_241at 284.966 kb on - strand, within PfGW456L13_241at 285.077 kb on + strand, within PfGW456L13_241at 285.077 kb on + strand, within PfGW456L13_241at 285.077 kb on + strand, within PfGW456L13_241at 285.077 kb on + strand, within PfGW456L13_241at 285.078 kb on - strand, within PfGW456L13_241at 285.078 kb on - strand, within PfGW456L13_241at 285.078 kb on - strand, within PfGW456L13_241at 285.078 kb on - strand, within PfGW456L13_241at 285.078 kb on - strand, within PfGW456L13_241at 285.634 kb on + strand, within PfGW456L13_241at 285.655 kb on + strandat 285.656 kb on - strandat 285.656 kb on - strandat 285.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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283,297 + PfGW456L13_239 0.54 -0.3
283,297 + PfGW456L13_239 0.54 +0.4
283,297 + PfGW456L13_239 0.54 +0.1
283,298 - PfGW456L13_239 0.54 -0.2
283,301 + PfGW456L13_239 0.55 +0.1
283,795 + PfGW456L13_239 0.84 +1.0
283,796 - PfGW456L13_239 0.84 -0.1
283,796 - PfGW456L13_239 0.84 +0.3
283,969 + -0.2
283,993 + -0.1
283,994 - +0.4
283,994 - +1.5
284,063 - -0.9
284,087 + +0.0
284,087 + -2.2
284,087 + -0.8
284,087 + +0.2
284,087 + +0.7
284,088 - -0.4
284,088 - -0.4
284,088 - -0.8
284,414 + PfGW456L13_240 0.47 -0.5
284,444 + PfGW456L13_240 0.51 -1.4
284,445 - PfGW456L13_240 0.51 -0.3
284,445 - PfGW456L13_240 0.51 -0.1
284,453 + PfGW456L13_240 0.52 -0.7
284,889 - PfGW456L13_241 0.11 -0.1
284,905 + PfGW456L13_241 0.12 -0.1
284,906 - PfGW456L13_241 0.13 +0.7
284,965 + PfGW456L13_241 0.19 -1.3
284,966 - PfGW456L13_241 0.19 -0.4
285,077 + PfGW456L13_241 0.31 +0.5
285,077 + PfGW456L13_241 0.31 -0.8
285,077 + PfGW456L13_241 0.31 +0.3
285,077 + PfGW456L13_241 0.31 +0.6
285,078 - PfGW456L13_241 0.31 -0.7
285,078 - PfGW456L13_241 0.31 -0.9
285,078 - PfGW456L13_241 0.31 +0.7
285,078 - PfGW456L13_241 0.31 -0.4
285,078 - PfGW456L13_241 0.31 +0.9
285,634 + PfGW456L13_241 0.90 +1.1
285,655 + +1.2
285,656 - -0.3
285,656 - -0.6
285,656 - -3.2

Or see this region's nucleotide sequence