Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_239 and PfGW456L13_240 are separated by 19 nucleotides PfGW456L13_240 and PfGW456L13_241 overlap by 4 nucleotides PfGW456L13_241 and PfGW456L13_242 overlap by 20 nucleotides
PfGW456L13_239 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 282,385 to 284,064
_239
PfGW456L13_240 - FIG143263: Glycosyl transferase, at 284,084 to 284,791
_240
PfGW456L13_241 - Lysophospholipid acyltransferase, at 284,788 to 285,729
_241
PfGW456L13_242 - Putative histidine ammonia-lyase protein, at 285,710 to 287,254
_242
Position (kb)
284
285 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 283.297 kb on + strand, within PfGW456L13_239 at 283.297 kb on + strand, within PfGW456L13_239 at 283.297 kb on + strand, within PfGW456L13_239 at 283.298 kb on - strand, within PfGW456L13_239 at 283.301 kb on + strand, within PfGW456L13_239 at 283.795 kb on + strand, within PfGW456L13_239 at 283.796 kb on - strand, within PfGW456L13_239 at 283.796 kb on - strand, within PfGW456L13_239 at 283.969 kb on + strand at 283.993 kb on + strand at 283.994 kb on - strand at 283.994 kb on - strand at 284.063 kb on - strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.087 kb on + strand at 284.088 kb on - strand at 284.088 kb on - strand at 284.088 kb on - strand at 284.414 kb on + strand, within PfGW456L13_240 at 284.444 kb on + strand, within PfGW456L13_240 at 284.445 kb on - strand, within PfGW456L13_240 at 284.445 kb on - strand, within PfGW456L13_240 at 284.453 kb on + strand, within PfGW456L13_240 at 284.889 kb on - strand, within PfGW456L13_241 at 284.905 kb on + strand, within PfGW456L13_241 at 284.906 kb on - strand, within PfGW456L13_241 at 284.965 kb on + strand, within PfGW456L13_241 at 284.966 kb on - strand, within PfGW456L13_241 at 285.077 kb on + strand, within PfGW456L13_241 at 285.077 kb on + strand, within PfGW456L13_241 at 285.077 kb on + strand, within PfGW456L13_241 at 285.077 kb on + strand, within PfGW456L13_241 at 285.078 kb on - strand, within PfGW456L13_241 at 285.078 kb on - strand, within PfGW456L13_241 at 285.078 kb on - strand, within PfGW456L13_241 at 285.078 kb on - strand, within PfGW456L13_241 at 285.078 kb on - strand, within PfGW456L13_241 at 285.634 kb on + strand, within PfGW456L13_241 at 285.655 kb on + strand at 285.656 kb on - strand at 285.656 kb on - strand at 285.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 283,297 + PfGW456L13_239 0.54 -0.3 283,297 + PfGW456L13_239 0.54 +0.4 283,297 + PfGW456L13_239 0.54 +0.1 283,298 - PfGW456L13_239 0.54 -0.2 283,301 + PfGW456L13_239 0.55 +0.1 283,795 + PfGW456L13_239 0.84 +1.0 283,796 - PfGW456L13_239 0.84 -0.1 283,796 - PfGW456L13_239 0.84 +0.3 283,969 + -0.2 283,993 + -0.1 283,994 - +0.4 283,994 - +1.5 284,063 - -0.9 284,087 + +0.0 284,087 + -2.2 284,087 + -0.8 284,087 + +0.2 284,087 + +0.7 284,088 - -0.4 284,088 - -0.4 284,088 - -0.8 284,414 + PfGW456L13_240 0.47 -0.5 284,444 + PfGW456L13_240 0.51 -1.4 284,445 - PfGW456L13_240 0.51 -0.3 284,445 - PfGW456L13_240 0.51 -0.1 284,453 + PfGW456L13_240 0.52 -0.7 284,889 - PfGW456L13_241 0.11 -0.1 284,905 + PfGW456L13_241 0.12 -0.1 284,906 - PfGW456L13_241 0.13 +0.7 284,965 + PfGW456L13_241 0.19 -1.3 284,966 - PfGW456L13_241 0.19 -0.4 285,077 + PfGW456L13_241 0.31 +0.5 285,077 + PfGW456L13_241 0.31 -0.8 285,077 + PfGW456L13_241 0.31 +0.3 285,077 + PfGW456L13_241 0.31 +0.6 285,078 - PfGW456L13_241 0.31 -0.7 285,078 - PfGW456L13_241 0.31 -0.9 285,078 - PfGW456L13_241 0.31 +0.7 285,078 - PfGW456L13_241 0.31 -0.4 285,078 - PfGW456L13_241 0.31 +0.9 285,634 + PfGW456L13_241 0.90 +1.1 285,655 + +1.2 285,656 - -0.3 285,656 - -0.6 285,656 - -3.2
Or see this region's nucleotide sequence