Experiment: formate McAA p-aminobenzoic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04505 and MMJJ_RS04510 are separated by 24 nucleotides MMJJ_RS04510 and MMJJ_RS04515 are separated by 142 nucleotides
MMJJ_RS04505: MMJJ_RS04505 - CDC48 family AAA ATPase, at 839,551 to 841,917
_RS04505
MMJJ_RS04510: MMJJ_RS04510 - hypothetical protein, at 841,942 to 842,406
_RS04510
MMJJ_RS04515: MMJJ_RS04515 - HD domain-containing protein, at 842,549 to 843,925
_RS04515
Position (kb) 841
842
843 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 840.963 kb on + strand, within MMJJ_RS04505 at 841.017 kb on + strand, within MMJJ_RS04505 at 841.040 kb on - strand, within MMJJ_RS04505 at 841.046 kb on - strand, within MMJJ_RS04505 at 841.093 kb on + strand, within MMJJ_RS04505 at 841.132 kb on + strand, within MMJJ_RS04505 at 841.426 kb on + strand, within MMJJ_RS04505 at 841.523 kb on - strand, within MMJJ_RS04505 at 841.524 kb on + strand, within MMJJ_RS04505 at 841.524 kb on + strand, within MMJJ_RS04505 at 841.566 kb on + strand, within MMJJ_RS04505 at 841.681 kb on - strand at 841.683 kb on - strand at 841.684 kb on + strand at 841.698 kb on + strand at 841.734 kb on + strand at 841.745 kb on - strand at 841.746 kb on + strand at 841.746 kb on + strand at 841.831 kb on - strand at 841.831 kb on - strand at 841.831 kb on - strand at 841.832 kb on + strand at 841.852 kb on - strand at 841.916 kb on + strand at 841.932 kb on - strand at 841.933 kb on + strand at 841.933 kb on + strand at 841.933 kb on + strand at 841.935 kb on - strand at 841.991 kb on - strand, within MMJJ_RS04510 at 841.992 kb on + strand, within MMJJ_RS04510 at 842.002 kb on - strand, within MMJJ_RS04510 at 842.002 kb on - strand, within MMJJ_RS04510 at 842.002 kb on - strand, within MMJJ_RS04510 at 842.002 kb on - strand, within MMJJ_RS04510 at 842.002 kb on - strand, within MMJJ_RS04510 at 842.003 kb on + strand, within MMJJ_RS04510 at 842.007 kb on - strand, within MMJJ_RS04510 at 842.008 kb on + strand, within MMJJ_RS04510 at 842.008 kb on + strand, within MMJJ_RS04510 at 842.008 kb on + strand, within MMJJ_RS04510 at 842.008 kb on + strand, within MMJJ_RS04510 at 842.008 kb on + strand, within MMJJ_RS04510 at 842.009 kb on - strand, within MMJJ_RS04510 at 842.010 kb on + strand, within MMJJ_RS04510 at 842.010 kb on + strand, within MMJJ_RS04510 at 842.019 kb on + strand, within MMJJ_RS04510 at 842.068 kb on - strand, within MMJJ_RS04510 at 842.068 kb on - strand, within MMJJ_RS04510 at 842.068 kb on - strand, within MMJJ_RS04510 at 842.068 kb on - strand, within MMJJ_RS04510 at 842.069 kb on + strand, within MMJJ_RS04510 at 842.081 kb on + strand, within MMJJ_RS04510 at 842.120 kb on - strand, within MMJJ_RS04510 at 842.132 kb on - strand, within MMJJ_RS04510 at 842.153 kb on - strand, within MMJJ_RS04510 at 842.159 kb on - strand, within MMJJ_RS04510 at 842.173 kb on + strand, within MMJJ_RS04510 at 842.173 kb on + strand, within MMJJ_RS04510 at 842.177 kb on + strand, within MMJJ_RS04510 at 842.206 kb on - strand, within MMJJ_RS04510 at 842.207 kb on + strand, within MMJJ_RS04510 at 842.230 kb on - strand, within MMJJ_RS04510 at 842.231 kb on + strand, within MMJJ_RS04510 at 842.231 kb on + strand, within MMJJ_RS04510 at 842.235 kb on - strand, within MMJJ_RS04510 at 842.236 kb on + strand, within MMJJ_RS04510 at 842.242 kb on - strand, within MMJJ_RS04510 at 842.250 kb on - strand, within MMJJ_RS04510 at 842.250 kb on - strand, within MMJJ_RS04510 at 842.251 kb on + strand, within MMJJ_RS04510 at 842.251 kb on + strand, within MMJJ_RS04510 at 842.252 kb on - strand, within MMJJ_RS04510 at 842.252 kb on - strand, within MMJJ_RS04510 at 842.254 kb on - strand, within MMJJ_RS04510 at 842.255 kb on + strand, within MMJJ_RS04510 at 842.270 kb on - strand, within MMJJ_RS04510 at 842.270 kb on - strand, within MMJJ_RS04510 at 842.270 kb on - strand, within MMJJ_RS04510 at 842.270 kb on - strand, within MMJJ_RS04510 at 842.277 kb on + strand, within MMJJ_RS04510 at 842.330 kb on - strand, within MMJJ_RS04510 at 842.337 kb on - strand, within MMJJ_RS04510 at 842.338 kb on + strand, within MMJJ_RS04510 at 842.341 kb on - strand, within MMJJ_RS04510 at 842.341 kb on - strand, within MMJJ_RS04510 at 842.341 kb on - strand, within MMJJ_RS04510 at 842.341 kb on - strand, within MMJJ_RS04510 at 842.342 kb on + strand, within MMJJ_RS04510 at 842.373 kb on - strand at 842.373 kb on - strand at 842.374 kb on + strand at 842.378 kb on + strand at 842.378 kb on + strand at 842.384 kb on - strand at 842.384 kb on - strand at 842.397 kb on - strand at 842.422 kb on - strand at 842.422 kb on - strand at 842.423 kb on + strand at 842.423 kb on + strand at 842.425 kb on - strand at 842.425 kb on - strand at 842.426 kb on + strand at 842.433 kb on - strand at 842.433 kb on - strand at 842.433 kb on - strand at 842.433 kb on - strand at 842.434 kb on + strand at 842.434 kb on + strand at 842.436 kb on - strand at 842.436 kb on - strand at 842.439 kb on + strand at 842.439 kb on + strand at 842.439 kb on + strand at 842.446 kb on - strand at 842.449 kb on - strand at 842.449 kb on - strand at 842.450 kb on + strand at 842.451 kb on - strand at 842.451 kb on - strand at 842.451 kb on - strand at 842.454 kb on - strand at 842.454 kb on - strand at 842.454 kb on - strand at 842.454 kb on - strand at 842.454 kb on - strand at 842.454 kb on - strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.455 kb on + strand at 842.456 kb on - strand at 842.456 kb on - strand at 842.457 kb on + strand at 842.457 kb on + strand at 842.457 kb on + strand at 842.457 kb on + strand at 842.457 kb on + strand at 842.457 kb on + strand at 842.460 kb on - strand at 842.460 kb on - strand at 842.460 kb on - strand at 842.460 kb on - strand at 842.460 kb on - strand at 842.461 kb on + strand at 842.461 kb on + strand at 842.461 kb on + strand at 842.461 kb on + strand at 842.512 kb on - strand at 842.521 kb on + strand at 842.523 kb on + strand at 842.524 kb on - strand at 842.525 kb on + strand at 842.532 kb on - strand at 842.536 kb on - strand at 842.538 kb on - strand at 842.538 kb on - strand at 842.538 kb on - strand at 842.538 kb on - strand at 842.539 kb on + strand at 842.545 kb on - strand at 842.545 kb on - strand at 842.619 kb on - strand at 842.627 kb on + strand at 842.671 kb on - strand at 842.671 kb on - strand at 842.682 kb on - strand at 842.721 kb on - strand, within MMJJ_RS04515 at 842.725 kb on - strand, within MMJJ_RS04515 at 842.725 kb on - strand, within MMJJ_RS04515 at 842.726 kb on + strand, within MMJJ_RS04515 at 842.726 kb on + strand, within MMJJ_RS04515 at 842.767 kb on - strand, within MMJJ_RS04515 at 842.833 kb on - strand, within MMJJ_RS04515 at 842.834 kb on + strand, within MMJJ_RS04515 at 842.834 kb on + strand, within MMJJ_RS04515 at 842.834 kb on + strand, within MMJJ_RS04515 at 842.834 kb on + strand, within MMJJ_RS04515 at 842.839 kb on + strand, within MMJJ_RS04515 at 842.852 kb on - strand, within MMJJ_RS04515 at 842.907 kb on + strand, within MMJJ_RS04515 at 842.907 kb on + strand, within MMJJ_RS04515 at 842.925 kb on - strand, within MMJJ_RS04515 at 842.933 kb on - strand, within MMJJ_RS04515 at 842.996 kb on - strand, within MMJJ_RS04515 at 842.997 kb on + strand, within MMJJ_RS04515 at 842.997 kb on + strand, within MMJJ_RS04515 at 843.000 kb on - strand, within MMJJ_RS04515 at 843.001 kb on + strand, within MMJJ_RS04515 at 843.001 kb on + strand, within MMJJ_RS04515 at 843.001 kb on + strand, within MMJJ_RS04515 at 843.003 kb on - strand, within MMJJ_RS04515 at 843.042 kb on - strand, within MMJJ_RS04515 at 843.042 kb on - strand, within MMJJ_RS04515 at 843.042 kb on - strand, within MMJJ_RS04515 at 843.043 kb on + strand, within MMJJ_RS04515 at 843.047 kb on + strand, within MMJJ_RS04515 at 843.067 kb on - strand, within MMJJ_RS04515 at 843.067 kb on - strand, within MMJJ_RS04515 at 843.068 kb on + strand, within MMJJ_RS04515 at 843.150 kb on + strand, within MMJJ_RS04515 at 843.170 kb on - strand, within MMJJ_RS04515 at 843.171 kb on + strand, within MMJJ_RS04515 at 843.171 kb on + strand, within MMJJ_RS04515 at 843.171 kb on + strand, within MMJJ_RS04515 at 843.171 kb on + strand, within MMJJ_RS04515 at 843.171 kb on + strand, within MMJJ_RS04515 at 843.172 kb on - strand, within MMJJ_RS04515 at 843.173 kb on + strand, within MMJJ_RS04515 at 843.173 kb on + strand, within MMJJ_RS04515 at 843.232 kb on - strand, within MMJJ_RS04515 at 843.252 kb on - strand, within MMJJ_RS04515 at 843.262 kb on + strand, within MMJJ_RS04515 at 843.267 kb on - strand, within MMJJ_RS04515 at 843.286 kb on + strand, within MMJJ_RS04515 at 843.286 kb on + strand, within MMJJ_RS04515 at 843.288 kb on - strand, within MMJJ_RS04515 at 843.289 kb on + strand, within MMJJ_RS04515 at 843.289 kb on + strand, within MMJJ_RS04515 at 843.292 kb on - strand, within MMJJ_RS04515 at 843.292 kb on - strand, within MMJJ_RS04515 at 843.292 kb on - strand, within MMJJ_RS04515 at 843.293 kb on + strand, within MMJJ_RS04515 at 843.293 kb on + strand, within MMJJ_RS04515 at 843.293 kb on + strand, within MMJJ_RS04515 at 843.293 kb on + strand, within MMJJ_RS04515 at 843.297 kb on - strand, within MMJJ_RS04515 at 843.298 kb on + strand, within MMJJ_RS04515 at 843.329 kb on + strand, within MMJJ_RS04515 at 843.339 kb on - strand, within MMJJ_RS04515 at 843.354 kb on - strand, within MMJJ_RS04515 at 843.359 kb on + strand, within MMJJ_RS04515 at 843.365 kb on + strand, within MMJJ_RS04515 at 843.381 kb on + strand, within MMJJ_RS04515 at 843.381 kb on + strand, within MMJJ_RS04515 at 843.381 kb on + strand, within MMJJ_RS04515 at 843.381 kb on + strand, within MMJJ_RS04515
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA p-aminobenzoic dropout remove 840,963 + MMJJ_RS04505 0.60 +1.2 841,017 + MMJJ_RS04505 0.62 -0.3 841,040 - MMJJ_RS04505 0.63 +0.6 841,046 - MMJJ_RS04505 0.63 +0.9 841,093 + MMJJ_RS04505 0.65 +0.4 841,132 + MMJJ_RS04505 0.67 -0.9 841,426 + MMJJ_RS04505 0.79 +0.9 841,523 - MMJJ_RS04505 0.83 -3.6 841,524 + MMJJ_RS04505 0.83 +0.0 841,524 + MMJJ_RS04505 0.83 -0.7 841,566 + MMJJ_RS04505 0.85 -2.4 841,681 - -3.8 841,683 - -0.7 841,684 + -1.0 841,698 + -0.1 841,734 + -1.7 841,745 - -1.4 841,746 + -1.7 841,746 + -1.7 841,831 - +0.5 841,831 - +0.5 841,831 - +0.0 841,832 + -0.1 841,852 - -0.3 841,916 + +0.4 841,932 - +0.0 841,933 + -0.2 841,933 + -0.0 841,933 + -0.3 841,935 - +0.1 841,991 - MMJJ_RS04510 0.11 +0.2 841,992 + MMJJ_RS04510 0.11 +0.4 842,002 - MMJJ_RS04510 0.13 +0.3 842,002 - MMJJ_RS04510 0.13 +0.8 842,002 - MMJJ_RS04510 0.13 -0.0 842,002 - MMJJ_RS04510 0.13 -0.8 842,002 - MMJJ_RS04510 0.13 +0.3 842,003 + MMJJ_RS04510 0.13 +0.2 842,007 - MMJJ_RS04510 0.14 -0.2 842,008 + MMJJ_RS04510 0.14 +0.5 842,008 + MMJJ_RS04510 0.14 -1.9 842,008 + MMJJ_RS04510 0.14 -0.4 842,008 + MMJJ_RS04510 0.14 +1.0 842,008 + MMJJ_RS04510 0.14 +0.1 842,009 - MMJJ_RS04510 0.14 +0.9 842,010 + MMJJ_RS04510 0.15 +0.5 842,010 + MMJJ_RS04510 0.15 +0.2 842,019 + MMJJ_RS04510 0.17 -0.1 842,068 - MMJJ_RS04510 0.27 +0.8 842,068 - MMJJ_RS04510 0.27 +0.4 842,068 - MMJJ_RS04510 0.27 +0.2 842,068 - MMJJ_RS04510 0.27 -0.2 842,069 + MMJJ_RS04510 0.27 +0.3 842,081 + MMJJ_RS04510 0.30 -2.1 842,120 - MMJJ_RS04510 0.38 -0.8 842,132 - MMJJ_RS04510 0.41 +0.8 842,153 - MMJJ_RS04510 0.45 +0.3 842,159 - MMJJ_RS04510 0.47 +0.4 842,173 + MMJJ_RS04510 0.50 -0.0 842,173 + MMJJ_RS04510 0.50 +0.3 842,177 + MMJJ_RS04510 0.51 -0.5 842,206 - MMJJ_RS04510 0.57 -0.1 842,207 + MMJJ_RS04510 0.57 +0.5 842,230 - MMJJ_RS04510 0.62 +0.4 842,231 + MMJJ_RS04510 0.62 -0.2 842,231 + MMJJ_RS04510 0.62 -0.2 842,235 - MMJJ_RS04510 0.63 +0.8 842,236 + MMJJ_RS04510 0.63 -0.2 842,242 - MMJJ_RS04510 0.65 +0.9 842,250 - MMJJ_RS04510 0.66 +1.6 842,250 - MMJJ_RS04510 0.66 +0.3 842,251 + MMJJ_RS04510 0.66 -0.6 842,251 + MMJJ_RS04510 0.66 +0.3 842,252 - MMJJ_RS04510 0.67 -0.7 842,252 - MMJJ_RS04510 0.67 +0.0 842,254 - MMJJ_RS04510 0.67 -0.6 842,255 + MMJJ_RS04510 0.67 +1.4 842,270 - MMJJ_RS04510 0.71 +0.2 842,270 - MMJJ_RS04510 0.71 +0.4 842,270 - MMJJ_RS04510 0.71 -0.2 842,270 - MMJJ_RS04510 0.71 -0.0 842,277 + MMJJ_RS04510 0.72 +0.9 842,330 - MMJJ_RS04510 0.83 -0.4 842,337 - MMJJ_RS04510 0.85 -0.7 842,338 + MMJJ_RS04510 0.85 +0.2 842,341 - MMJJ_RS04510 0.86 -0.4 842,341 - MMJJ_RS04510 0.86 +0.5 842,341 - MMJJ_RS04510 0.86 -0.1 842,341 - MMJJ_RS04510 0.86 +0.5 842,342 + MMJJ_RS04510 0.86 +0.6 842,373 - +1.4 842,373 - +0.5 842,374 + -0.9 842,378 + +0.4 842,378 + +1.3 842,384 - -0.1 842,384 - -1.2 842,397 - -0.3 842,422 - -1.1 842,422 - +0.2 842,423 + -0.1 842,423 + -0.4 842,425 - +0.7 842,425 - -0.6 842,426 + -0.4 842,433 - -0.5 842,433 - +0.1 842,433 - -0.7 842,433 - -0.4 842,434 + -0.7 842,434 + -0.7 842,436 - -1.3 842,436 - +0.3 842,439 + +0.5 842,439 + -0.2 842,439 + -0.7 842,446 - +0.3 842,449 - -2.6 842,449 - +0.6 842,450 + -0.1 842,451 - -0.1 842,451 - +0.7 842,451 - +0.0 842,454 - +0.2 842,454 - +0.3 842,454 - -0.3 842,454 - -0.6 842,454 - +1.4 842,454 - -0.1 842,455 + -0.7 842,455 + -0.4 842,455 + -0.1 842,455 + -0.3 842,455 + +0.8 842,455 + +0.4 842,455 + -0.5 842,455 + +0.9 842,456 - +0.3 842,456 - +0.2 842,457 + +0.2 842,457 + +1.7 842,457 + +0.4 842,457 + -1.1 842,457 + +1.3 842,457 + +0.8 842,460 - +0.4 842,460 - -1.9 842,460 - -2.6 842,460 - +0.8 842,460 - +0.3 842,461 + -1.4 842,461 + +0.8 842,461 + +0.1 842,461 + -0.2 842,512 - +0.2 842,521 + -0.8 842,523 + +0.1 842,524 - -1.7 842,525 + +0.3 842,532 - -0.4 842,536 - -0.5 842,538 - -0.7 842,538 - -1.0 842,538 - -1.3 842,538 - -0.4 842,539 + -0.2 842,545 - -0.8 842,545 - +0.1 842,619 - +0.2 842,627 + -0.3 842,671 - -0.8 842,671 - +1.1 842,682 - -0.1 842,721 - MMJJ_RS04515 0.12 -0.1 842,725 - MMJJ_RS04515 0.13 -0.4 842,725 - MMJJ_RS04515 0.13 -1.4 842,726 + MMJJ_RS04515 0.13 -0.4 842,726 + MMJJ_RS04515 0.13 -0.7 842,767 - MMJJ_RS04515 0.16 +1.2 842,833 - MMJJ_RS04515 0.21 +0.5 842,834 + MMJJ_RS04515 0.21 -0.1 842,834 + MMJJ_RS04515 0.21 -0.2 842,834 + MMJJ_RS04515 0.21 -0.3 842,834 + MMJJ_RS04515 0.21 -0.6 842,839 + MMJJ_RS04515 0.21 -0.1 842,852 - MMJJ_RS04515 0.22 +0.3 842,907 + MMJJ_RS04515 0.26 -0.3 842,907 + MMJJ_RS04515 0.26 +0.2 842,925 - MMJJ_RS04515 0.27 -1.0 842,933 - MMJJ_RS04515 0.28 +0.0 842,996 - MMJJ_RS04515 0.32 -2.3 842,997 + MMJJ_RS04515 0.33 -1.9 842,997 + MMJJ_RS04515 0.33 -0.3 843,000 - MMJJ_RS04515 0.33 -0.4 843,001 + MMJJ_RS04515 0.33 -1.6 843,001 + MMJJ_RS04515 0.33 -0.2 843,001 + MMJJ_RS04515 0.33 +0.6 843,003 - MMJJ_RS04515 0.33 +0.8 843,042 - MMJJ_RS04515 0.36 -0.6 843,042 - MMJJ_RS04515 0.36 -0.1 843,042 - MMJJ_RS04515 0.36 +0.1 843,043 + MMJJ_RS04515 0.36 -0.0 843,047 + MMJJ_RS04515 0.36 -0.4 843,067 - MMJJ_RS04515 0.38 -1.0 843,067 - MMJJ_RS04515 0.38 -0.3 843,068 + MMJJ_RS04515 0.38 +1.6 843,150 + MMJJ_RS04515 0.44 -1.0 843,170 - MMJJ_RS04515 0.45 +0.5 843,171 + MMJJ_RS04515 0.45 -2.1 843,171 + MMJJ_RS04515 0.45 +0.1 843,171 + MMJJ_RS04515 0.45 -0.4 843,171 + MMJJ_RS04515 0.45 +0.8 843,171 + MMJJ_RS04515 0.45 -1.4 843,172 - MMJJ_RS04515 0.45 -1.0 843,173 + MMJJ_RS04515 0.45 -0.0 843,173 + MMJJ_RS04515 0.45 +0.4 843,232 - MMJJ_RS04515 0.50 +1.2 843,252 - MMJJ_RS04515 0.51 -1.0 843,262 + MMJJ_RS04515 0.52 +0.8 843,267 - MMJJ_RS04515 0.52 +0.5 843,286 + MMJJ_RS04515 0.54 -2.1 843,286 + MMJJ_RS04515 0.54 -0.9 843,288 - MMJJ_RS04515 0.54 -0.1 843,289 + MMJJ_RS04515 0.54 -0.9 843,289 + MMJJ_RS04515 0.54 +0.2 843,292 - MMJJ_RS04515 0.54 +0.2 843,292 - MMJJ_RS04515 0.54 -0.4 843,292 - MMJJ_RS04515 0.54 +0.3 843,293 + MMJJ_RS04515 0.54 -0.8 843,293 + MMJJ_RS04515 0.54 -1.4 843,293 + MMJJ_RS04515 0.54 +0.5 843,293 + MMJJ_RS04515 0.54 -0.2 843,297 - MMJJ_RS04515 0.54 +0.9 843,298 + MMJJ_RS04515 0.54 -0.1 843,329 + MMJJ_RS04515 0.57 +0.3 843,339 - MMJJ_RS04515 0.57 -0.8 843,354 - MMJJ_RS04515 0.58 -0.8 843,359 + MMJJ_RS04515 0.59 +0.0 843,365 + MMJJ_RS04515 0.59 +0.1 843,381 + MMJJ_RS04515 0.60 +0.1 843,381 + MMJJ_RS04515 0.60 -0.6 843,381 + MMJJ_RS04515 0.60 -0.2 843,381 + MMJJ_RS04515 0.60 -0.3
Or see this region's nucleotide sequence