Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05645

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05640 and AO353_05645 are separated by 10 nucleotidesAO353_05645 and AO353_05650 are separated by 297 nucleotides AO353_05640: AO353_05640 - 4-hydroxy-tetrahydrodipicolinate reductase, at 1,246,546 to 1,247,352 _05640 AO353_05645: AO353_05645 - molecular chaperone DnaJ, at 1,247,363 to 1,248,487 _05645 AO353_05650: AO353_05650 - molecular chaperone DnaK, at 1,248,785 to 1,250,701 _05650 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -1 0 1 2 3 4at 1246.418 kb on - strandat 1247.365 kb on - strandat 1248.503 kb on - strandat 1248.504 kb on - strandat 1248.504 kb on - strandat 1248.557 kb on - strandat 1248.743 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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1,246,418 - -1.5
1,247,365 - +1.6
1,248,503 - +4.7
1,248,504 - -0.8
1,248,504 - -0.4
1,248,557 - +0.0
1,248,743 - +2.5
1,248,787 - +1.9
1,248,787 - +0.6
1,248,787 - +0.7
1,248,787 - +0.3
1,248,787 - +1.9
1,248,787 - +1.0
1,248,787 - +0.3
1,248,787 - -1.0
1,248,895 - +2.3

Or see this region's nucleotide sequence