Experiment: Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_850 and PfGW456L13_851 are separated by 194 nucleotides PfGW456L13_851 and PfGW456L13_852 are separated by 209 nucleotides PfGW456L13_852 and PfGW456L13_853 are separated by 124 nucleotides PfGW456L13_853 and PfGW456L13_854 are separated by 119 nucleotides
PfGW456L13_850 - Adenylate cyclase (EC 4.6.1.1), at 955,147 to 957,990
_850
PfGW456L13_851 - DNA-binding protein inhibitor Id-2-related protein, at 958,185 to 958,430
_851
PfGW456L13_852 - FIG00954215: hypothetical protein, at 958,640 to 958,924
_852
PfGW456L13_853 - Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18), at 959,049 to 959,708
_853
PfGW456L13_854 - Argininosuccinate lyase (EC 4.3.2.1), at 959,828 to 961,222
_854
Position (kb) 958
959 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 957.698 kb on + strand, within PfGW456L13_850 at 957.698 kb on + strand, within PfGW456L13_850 at 957.698 kb on + strand, within PfGW456L13_850 at 957.699 kb on - strand, within PfGW456L13_850 at 957.699 kb on - strand, within PfGW456L13_850 at 957.791 kb on + strand at 957.791 kb on + strand at 957.792 kb on - strand at 958.050 kb on - strand at 958.073 kb on - strand at 958.194 kb on + strand at 958.194 kb on + strand at 958.195 kb on - strand at 958.195 kb on - strand at 958.195 kb on - strand at 958.195 kb on - strand at 958.195 kb on - strand at 958.195 kb on - strand at 958.422 kb on - strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.430 kb on + strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.431 kb on - strand at 958.449 kb on - strand at 958.529 kb on + strand at 958.530 kb on - strand at 958.530 kb on - strand at 958.570 kb on + strand at 958.571 kb on - strand at 958.623 kb on + strand at 958.624 kb on - strand at 958.641 kb on + strand at 958.642 kb on - strand at 958.690 kb on - strand, within PfGW456L13_852 at 958.785 kb on + strand, within PfGW456L13_852 at 959.005 kb on + strand at 959.005 kb on + strand at 959.006 kb on - strand at 959.006 kb on - strand at 959.006 kb on - strand at 959.006 kb on - strand at 959.007 kb on + strand at 959.007 kb on + strand at 959.007 kb on + strand at 959.008 kb on - strand at 959.008 kb on - strand at 959.078 kb on + strand at 959.078 kb on + strand at 959.078 kb on + strand at 959.078 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.137 kb on + strand, within PfGW456L13_853 at 959.137 kb on + strand, within PfGW456L13_853 at 959.137 kb on + strand, within PfGW456L13_853 at 959.137 kb on + strand, within PfGW456L13_853 at 959.145 kb on + strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.209 kb on + strand, within PfGW456L13_853 at 959.209 kb on + strand, within PfGW456L13_853 at 959.210 kb on - strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.251 kb on - strand, within PfGW456L13_853 at 959.251 kb on - strand, within PfGW456L13_853 at 959.251 kb on - strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.371 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.518 kb on - strand, within PfGW456L13_853 at 959.706 kb on + strand at 959.789 kb on + strand at 959.789 kb on + strand at 959.789 kb on + strand at 959.789 kb on + strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml remove 957,698 + PfGW456L13_850 0.90 +0.4 957,698 + PfGW456L13_850 0.90 -0.8 957,698 + PfGW456L13_850 0.90 +0.3 957,699 - PfGW456L13_850 0.90 +0.3 957,699 - PfGW456L13_850 0.90 -1.3 957,791 + +0.2 957,791 + +0.5 957,792 - +0.3 958,050 - +1.4 958,073 - -0.3 958,194 + -1.3 958,194 + -1.3 958,195 - +0.7 958,195 - -1.0 958,195 - -1.0 958,195 - -0.8 958,195 - +0.2 958,195 - +0.5 958,422 - +0.2 958,430 + -0.4 958,430 + -1.3 958,430 + +0.3 958,430 + -1.5 958,430 + -0.1 958,430 + -0.6 958,430 + +0.6 958,430 + +1.3 958,430 + -0.0 958,430 + +1.0 958,430 + +0.4 958,430 + +0.2 958,430 + +0.4 958,431 - +2.3 958,431 - +0.1 958,431 - +0.7 958,431 - -1.1 958,431 - +0.8 958,431 - +0.4 958,431 - +0.3 958,431 - +0.7 958,449 - +1.9 958,529 + +0.8 958,530 - +0.1 958,530 - -1.5 958,570 + -0.8 958,571 - -0.1 958,623 + +0.5 958,624 - +0.9 958,641 + -0.7 958,642 - +0.9 958,690 - PfGW456L13_852 0.18 -1.7 958,785 + PfGW456L13_852 0.51 -0.9 959,005 + -0.3 959,005 + -1.0 959,006 - +3.1 959,006 - -0.4 959,006 - +0.3 959,006 - -1.5 959,007 + -1.2 959,007 + +1.1 959,007 + -0.3 959,008 - +0.8 959,008 - +0.1 959,078 + -0.4 959,078 + +0.4 959,078 + +0.7 959,078 + -0.8 959,082 + -0.0 959,082 + +0.4 959,082 + -0.3 959,082 + +0.8 959,082 + +1.3 959,082 + -0.6 959,083 - +0.3 959,083 - +0.3 959,083 - +0.2 959,083 - +0.3 959,083 - +0.1 959,083 - +0.4 959,083 - +0.9 959,085 + -0.0 959,085 + -0.2 959,085 + +0.2 959,085 + -0.8 959,085 + +1.8 959,085 + +0.5 959,085 + -0.5 959,085 + +0.3 959,085 + -0.2 959,085 + +0.3 959,085 + +1.0 959,085 + +0.0 959,086 - -0.8 959,086 - +0.1 959,086 - -0.0 959,086 - +0.4 959,086 - -0.2 959,086 - +0.2 959,086 - +0.6 959,086 - -0.7 959,086 - -1.3 959,137 + PfGW456L13_853 0.13 +0.7 959,137 + PfGW456L13_853 0.13 -1.0 959,137 + PfGW456L13_853 0.13 -0.5 959,137 + PfGW456L13_853 0.13 -0.6 959,145 + PfGW456L13_853 0.15 -0.1 959,146 - PfGW456L13_853 0.15 -0.0 959,146 - PfGW456L13_853 0.15 +1.7 959,146 - PfGW456L13_853 0.15 +0.4 959,146 - PfGW456L13_853 0.15 -0.9 959,146 - PfGW456L13_853 0.15 +0.3 959,209 + PfGW456L13_853 0.24 +0.7 959,209 + PfGW456L13_853 0.24 -0.4 959,210 - PfGW456L13_853 0.24 +0.5 959,250 + PfGW456L13_853 0.30 -1.3 959,250 + PfGW456L13_853 0.30 -2.8 959,250 + PfGW456L13_853 0.30 +0.3 959,250 + PfGW456L13_853 0.30 -0.3 959,250 + PfGW456L13_853 0.30 -0.5 959,251 - PfGW456L13_853 0.31 +0.5 959,251 - PfGW456L13_853 0.31 -0.3 959,251 - PfGW456L13_853 0.31 +1.1 959,343 + PfGW456L13_853 0.45 +0.6 959,343 + PfGW456L13_853 0.45 +0.6 959,343 + PfGW456L13_853 0.45 +0.3 959,343 + PfGW456L13_853 0.45 +0.3 959,344 - PfGW456L13_853 0.45 -0.6 959,344 - PfGW456L13_853 0.45 -1.7 959,344 - PfGW456L13_853 0.45 +0.3 959,344 - PfGW456L13_853 0.45 +1.0 959,371 - PfGW456L13_853 0.49 -0.1 959,482 - PfGW456L13_853 0.66 -0.9 959,482 - PfGW456L13_853 0.66 -0.7 959,482 - PfGW456L13_853 0.66 +1.2 959,482 - PfGW456L13_853 0.66 -0.7 959,482 - PfGW456L13_853 0.66 +1.4 959,482 - -1.1 959,482 - PfGW456L13_853 0.66 +0.6 959,482 - PfGW456L13_853 0.66 -1.9 959,517 + PfGW456L13_853 0.71 +1.3 959,517 + PfGW456L13_853 0.71 +0.3 959,517 + PfGW456L13_853 0.71 -0.3 959,517 + PfGW456L13_853 0.71 -0.3 959,517 + PfGW456L13_853 0.71 +0.7 959,517 + PfGW456L13_853 0.71 +0.6 959,517 + PfGW456L13_853 0.71 -1.4 959,518 - PfGW456L13_853 0.71 -0.3 959,706 + -0.1 959,789 + +0.4 959,789 + -0.5 959,789 + +0.5 959,789 + -1.6 959,790 - +0.4 959,790 - +0.2 959,790 - +0.8 959,790 - +0.6 959,790 - +2.1 959,829 + +0.2
Or see this region's nucleotide sequence