Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4667

Experiment: Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4666 and PfGW456L13_4667 are separated by 45 nucleotidesPfGW456L13_4667 and PfGW456L13_4668 are separated by 53 nucleotides PfGW456L13_4666 - Decarboxylase family protein, at 5,205,039 to 5,206,157 _4666 PfGW456L13_4667 - Regulatory protein RecX, at 5,206,203 to 5,206,625 _4667 PfGW456L13_4668 - RecA protein, at 5,206,679 to 5,207,737 _4668 Position (kb) 5206 5207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5205.342 kb on + strand, within PfGW456L13_4666at 5205.342 kb on + strand, within PfGW456L13_4666at 5205.342 kb on + strand, within PfGW456L13_4666at 5205.343 kb on - strand, within PfGW456L13_4666at 5205.343 kb on - strand, within PfGW456L13_4666at 5205.343 kb on - strand, within PfGW456L13_4666at 5205.474 kb on - strand, within PfGW456L13_4666at 5205.635 kb on - strand, within PfGW456L13_4666at 5205.756 kb on + strand, within PfGW456L13_4666at 5205.756 kb on + strand, within PfGW456L13_4666at 5205.757 kb on - strand, within PfGW456L13_4666at 5205.757 kb on - strand, within PfGW456L13_4666at 5205.757 kb on - strand, within PfGW456L13_4666at 5205.757 kb on - strand, within PfGW456L13_4666at 5205.795 kb on + strand, within PfGW456L13_4666at 5205.795 kb on + strand, within PfGW456L13_4666at 5205.796 kb on - strand, within PfGW456L13_4666at 5205.834 kb on + strand, within PfGW456L13_4666at 5205.834 kb on + strand, within PfGW456L13_4666at 5205.834 kb on + strand, within PfGW456L13_4666at 5205.834 kb on + strand, within PfGW456L13_4666at 5205.835 kb on - strand, within PfGW456L13_4666at 5205.975 kb on + strand, within PfGW456L13_4666at 5205.975 kb on + strand, within PfGW456L13_4666at 5205.976 kb on - strand, within PfGW456L13_4666at 5205.976 kb on - strand, within PfGW456L13_4666at 5205.976 kb on - strand, within PfGW456L13_4666at 5206.077 kb on + strandat 5206.077 kb on + strandat 5206.077 kb on + strandat 5206.077 kb on + strandat 5206.078 kb on - strandat 5206.078 kb on - strandat 5206.078 kb on - strandat 5206.078 kb on - strandat 5206.120 kb on + strandat 5206.120 kb on + strandat 5206.120 kb on + strandat 5206.121 kb on - strandat 5206.163 kb on - strandat 5206.163 kb on - strandat 5206.182 kb on + strandat 5206.182 kb on + strandat 5206.182 kb on + strandat 5206.182 kb on + strandat 5206.183 kb on - strandat 5206.183 kb on - strandat 5206.183 kb on - strandat 5206.186 kb on + strandat 5206.187 kb on - strandat 5206.187 kb on - strandat 5206.256 kb on - strand, within PfGW456L13_4667at 5206.341 kb on - strand, within PfGW456L13_4667at 5206.440 kb on + strand, within PfGW456L13_4667at 5206.441 kb on - strand, within PfGW456L13_4667at 5206.578 kb on - strand, within PfGW456L13_4667at 5206.863 kb on + strand, within PfGW456L13_4668at 5206.864 kb on - strand, within PfGW456L13_4668at 5206.864 kb on - strand, within PfGW456L13_4668at 5206.864 kb on - strand, within PfGW456L13_4668at 5206.870 kb on - strand, within PfGW456L13_4668at 5206.935 kb on + strand, within PfGW456L13_4668at 5206.935 kb on + strand, within PfGW456L13_4668at 5206.936 kb on - strand, within PfGW456L13_4668at 5207.088 kb on + strand, within PfGW456L13_4668at 5207.089 kb on - strand, within PfGW456L13_4668at 5207.089 kb on - strand, within PfGW456L13_4668at 5207.089 kb on - strand, within PfGW456L13_4668at 5207.104 kb on + strand, within PfGW456L13_4668at 5207.153 kb on - strand, within PfGW456L13_4668at 5207.213 kb on - strand, within PfGW456L13_4668at 5207.213 kb on - strand, within PfGW456L13_4668at 5207.547 kb on + strand, within PfGW456L13_4668at 5207.548 kb on - strand, within PfGW456L13_4668

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml
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5,205,342 + PfGW456L13_4666 0.27 +0.7
5,205,342 + PfGW456L13_4666 0.27 +0.2
5,205,342 + PfGW456L13_4666 0.27 -1.4
5,205,343 - PfGW456L13_4666 0.27 +0.2
5,205,343 - PfGW456L13_4666 0.27 +0.8
5,205,343 - PfGW456L13_4666 0.27 +1.0
5,205,474 - PfGW456L13_4666 0.39 -0.2
5,205,635 - PfGW456L13_4666 0.53 -0.3
5,205,756 + PfGW456L13_4666 0.64 +1.8
5,205,756 + PfGW456L13_4666 0.64 +0.0
5,205,757 - PfGW456L13_4666 0.64 +0.6
5,205,757 - PfGW456L13_4666 0.64 +0.6
5,205,757 - PfGW456L13_4666 0.64 -1.1
5,205,757 - PfGW456L13_4666 0.64 +0.1
5,205,795 + PfGW456L13_4666 0.68 -0.1
5,205,795 + PfGW456L13_4666 0.68 -0.7
5,205,796 - PfGW456L13_4666 0.68 +0.1
5,205,834 + PfGW456L13_4666 0.71 -0.9
5,205,834 + PfGW456L13_4666 0.71 +0.1
5,205,834 + PfGW456L13_4666 0.71 +0.2
5,205,834 + PfGW456L13_4666 0.71 -0.1
5,205,835 - PfGW456L13_4666 0.71 -0.4
5,205,975 + PfGW456L13_4666 0.84 -0.2
5,205,975 + PfGW456L13_4666 0.84 +0.1
5,205,976 - PfGW456L13_4666 0.84 -0.2
5,205,976 - PfGW456L13_4666 0.84 +0.0
5,205,976 - PfGW456L13_4666 0.84 -1.2
5,206,077 + -1.3
5,206,077 + +0.6
5,206,077 + +0.2
5,206,077 + -0.2
5,206,078 - +1.2
5,206,078 - +0.3
5,206,078 - -0.4
5,206,078 - +1.0
5,206,120 + -0.7
5,206,120 + -0.5
5,206,120 + +0.0
5,206,121 - +0.4
5,206,163 - +2.6
5,206,163 - -0.8
5,206,182 + -1.1
5,206,182 + -0.1
5,206,182 + -0.9
5,206,182 + +1.0
5,206,183 - +0.1
5,206,183 - -0.8
5,206,183 - +1.4
5,206,186 + -0.7
5,206,187 - -0.5
5,206,187 - -0.1
5,206,256 - PfGW456L13_4667 0.13 -0.3
5,206,341 - PfGW456L13_4667 0.33 -3.4
5,206,440 + PfGW456L13_4667 0.56 -0.9
5,206,441 - PfGW456L13_4667 0.56 -0.6
5,206,578 - PfGW456L13_4667 0.89 -1.1
5,206,863 + PfGW456L13_4668 0.17 -0.9
5,206,864 - PfGW456L13_4668 0.17 -1.3
5,206,864 - PfGW456L13_4668 0.17 -2.6
5,206,864 - PfGW456L13_4668 0.17 -1.4
5,206,870 - PfGW456L13_4668 0.18 -2.9
5,206,935 + PfGW456L13_4668 0.24 -0.4
5,206,935 + PfGW456L13_4668 0.24 +0.0
5,206,936 - PfGW456L13_4668 0.24 -3.0
5,207,088 + PfGW456L13_4668 0.39 -2.9
5,207,089 - PfGW456L13_4668 0.39 -1.0
5,207,089 - PfGW456L13_4668 0.39 -1.1
5,207,089 - PfGW456L13_4668 0.39 -2.3
5,207,104 + PfGW456L13_4668 0.40 -1.6
5,207,153 - PfGW456L13_4668 0.45 -0.6
5,207,213 - PfGW456L13_4668 0.50 -1.1
5,207,213 - PfGW456L13_4668 0.50 -1.9
5,207,547 + PfGW456L13_4668 0.82 -2.4
5,207,548 - PfGW456L13_4668 0.82 -1.9

Or see this region's nucleotide sequence