Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4596 and Echvi_4597 are separated by 475 nucleotides Echvi_4597 and Echvi_4598 are separated by 36 nucleotides Echvi_4598 and Echvi_4599 are separated by 96 nucleotides
Echvi_4596: Echvi_4596 - Phosphate-selective porin, at 5,503,473 to 5,504,678
_4596
Echvi_4597: Echvi_4597 - ribose-phosphate pyrophosphokinase, at 5,505,154 to 5,506,083
_4597
Echvi_4598: Echvi_4598 - ribosomal protein L25, Ctc-form, at 5,506,120 to 5,506,710
_4598
Echvi_4599: Echvi_4599 - peptidyl-tRNA hydrolase, at 5,506,807 to 5,507,367
_4599
Position (kb)
5505
5506
5507 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5504.164 kb on - strand, within Echvi_4596 at 5504.193 kb on - strand, within Echvi_4596 at 5504.262 kb on - strand, within Echvi_4596 at 5504.263 kb on + strand, within Echvi_4596 at 5504.263 kb on + strand, within Echvi_4596 at 5504.295 kb on + strand, within Echvi_4596 at 5504.296 kb on - strand, within Echvi_4596 at 5504.365 kb on + strand, within Echvi_4596 at 5504.369 kb on - strand, within Echvi_4596 at 5504.386 kb on + strand, within Echvi_4596 at 5504.422 kb on - strand, within Echvi_4596 at 5504.564 kb on + strand at 5504.565 kb on - strand at 5504.622 kb on - strand at 5504.622 kb on - strand at 5504.643 kb on + strand at 5504.643 kb on + strand at 5504.678 kb on + strand at 5504.706 kb on + strand at 5504.706 kb on + strand at 5504.761 kb on + strand at 5504.824 kb on + strand at 5504.825 kb on - strand at 5504.858 kb on - strand at 5504.876 kb on + strand at 5504.876 kb on + strand at 5504.876 kb on + strand at 5504.876 kb on + strand at 5504.877 kb on - strand at 5504.877 kb on - strand at 5504.878 kb on + strand at 5504.878 kb on + strand at 5504.878 kb on + strand at 5504.878 kb on + strand at 5504.879 kb on - strand at 5504.879 kb on - strand at 5504.879 kb on - strand at 5504.879 kb on - strand at 5504.879 kb on - strand at 5504.920 kb on + strand at 5504.920 kb on + strand at 5504.920 kb on + strand at 5504.921 kb on - strand at 5504.921 kb on - strand at 5505.013 kb on + strand at 5505.014 kb on - strand at 5505.015 kb on + strand at 5505.036 kb on - strand at 5505.062 kb on + strand at 5505.063 kb on - strand at 5505.063 kb on - strand at 5505.065 kb on + strand at 5505.080 kb on + strand at 5506.732 kb on + strand at 5506.732 kb on + strand at 5506.732 kb on + strand at 5506.732 kb on + strand at 5506.736 kb on + strand at 5506.784 kb on + strand at 5506.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 5,504,164 - Echvi_4596 0.57 +0.9 5,504,193 - Echvi_4596 0.60 -1.6 5,504,262 - Echvi_4596 0.65 -2.2 5,504,263 + Echvi_4596 0.66 -0.8 5,504,263 + Echvi_4596 0.66 +0.3 5,504,295 + Echvi_4596 0.68 -0.9 5,504,296 - Echvi_4596 0.68 -2.9 5,504,365 + Echvi_4596 0.74 +0.3 5,504,369 - Echvi_4596 0.74 -0.0 5,504,386 + Echvi_4596 0.76 +0.7 5,504,422 - Echvi_4596 0.79 +0.7 5,504,564 + +0.7 5,504,565 - +1.5 5,504,622 - -0.5 5,504,622 - +0.6 5,504,643 + +1.4 5,504,643 + +1.1 5,504,678 + +0.3 5,504,706 + -0.5 5,504,706 + +1.1 5,504,761 + -0.5 5,504,824 + -0.4 5,504,825 - -1.2 5,504,858 - +2.1 5,504,876 + -1.8 5,504,876 + -1.3 5,504,876 + -0.8 5,504,876 + +1.6 5,504,877 - +0.1 5,504,877 - +0.5 5,504,878 + -0.1 5,504,878 + -0.5 5,504,878 + +0.5 5,504,878 + +0.5 5,504,879 - -1.5 5,504,879 - +1.3 5,504,879 - +0.9 5,504,879 - -1.3 5,504,879 - +0.3 5,504,920 + -0.8 5,504,920 + +0.5 5,504,920 + +0.4 5,504,921 - -0.2 5,504,921 - +1.0 5,505,013 + -0.1 5,505,014 - -1.5 5,505,015 + -0.1 5,505,036 - -0.1 5,505,062 + -0.3 5,505,063 - +1.1 5,505,063 - -1.2 5,505,065 + +0.8 5,505,080 + -1.0 5,506,732 + -0.7 5,506,732 + -1.0 5,506,732 + -0.1 5,506,732 + -1.2 5,506,736 + -0.7 5,506,784 + -1.1 5,506,784 + -1.5
Or see this region's nucleotide sequence