Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4597

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4596 and Echvi_4597 are separated by 475 nucleotidesEchvi_4597 and Echvi_4598 are separated by 36 nucleotidesEchvi_4598 and Echvi_4599 are separated by 96 nucleotides Echvi_4596: Echvi_4596 - Phosphate-selective porin, at 5,503,473 to 5,504,678 _4596 Echvi_4597: Echvi_4597 - ribose-phosphate pyrophosphokinase, at 5,505,154 to 5,506,083 _4597 Echvi_4598: Echvi_4598 - ribosomal protein L25, Ctc-form, at 5,506,120 to 5,506,710 _4598 Echvi_4599: Echvi_4599 - peptidyl-tRNA hydrolase, at 5,506,807 to 5,507,367 _4599 Position (kb) 5505 5506 5507Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5504.164 kb on - strand, within Echvi_4596at 5504.193 kb on - strand, within Echvi_4596at 5504.262 kb on - strand, within Echvi_4596at 5504.263 kb on + strand, within Echvi_4596at 5504.263 kb on + strand, within Echvi_4596at 5504.295 kb on + strand, within Echvi_4596at 5504.296 kb on - strand, within Echvi_4596at 5504.365 kb on + strand, within Echvi_4596at 5504.369 kb on - strand, within Echvi_4596at 5504.386 kb on + strand, within Echvi_4596at 5504.422 kb on - strand, within Echvi_4596at 5504.564 kb on + strandat 5504.565 kb on - strandat 5504.622 kb on - strandat 5504.622 kb on - strandat 5504.643 kb on + strandat 5504.643 kb on + strandat 5504.678 kb on + strandat 5504.706 kb on + strandat 5504.706 kb on + strandat 5504.761 kb on + strandat 5504.824 kb on + strandat 5504.825 kb on - strandat 5504.858 kb on - strandat 5504.876 kb on + strandat 5504.876 kb on + strandat 5504.876 kb on + strandat 5504.876 kb on + strandat 5504.877 kb on - strandat 5504.877 kb on - strandat 5504.878 kb on + strandat 5504.878 kb on + strandat 5504.878 kb on + strandat 5504.878 kb on + strandat 5504.879 kb on - strandat 5504.879 kb on - strandat 5504.879 kb on - strandat 5504.879 kb on - strandat 5504.879 kb on - strandat 5504.920 kb on + strandat 5504.920 kb on + strandat 5504.920 kb on + strandat 5504.921 kb on - strandat 5504.921 kb on - strandat 5505.013 kb on + strandat 5505.014 kb on - strandat 5505.015 kb on + strandat 5505.036 kb on - strandat 5505.062 kb on + strandat 5505.063 kb on - strandat 5505.063 kb on - strandat 5505.065 kb on + strandat 5505.080 kb on + strandat 5506.732 kb on + strandat 5506.732 kb on + strandat 5506.732 kb on + strandat 5506.732 kb on + strandat 5506.736 kb on + strandat 5506.784 kb on + strandat 5506.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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5,504,164 - Echvi_4596 0.57 +0.9
5,504,193 - Echvi_4596 0.60 -1.6
5,504,262 - Echvi_4596 0.65 -2.2
5,504,263 + Echvi_4596 0.66 -0.8
5,504,263 + Echvi_4596 0.66 +0.3
5,504,295 + Echvi_4596 0.68 -0.9
5,504,296 - Echvi_4596 0.68 -2.9
5,504,365 + Echvi_4596 0.74 +0.3
5,504,369 - Echvi_4596 0.74 -0.0
5,504,386 + Echvi_4596 0.76 +0.7
5,504,422 - Echvi_4596 0.79 +0.7
5,504,564 + +0.7
5,504,565 - +1.5
5,504,622 - -0.5
5,504,622 - +0.6
5,504,643 + +1.4
5,504,643 + +1.1
5,504,678 + +0.3
5,504,706 + -0.5
5,504,706 + +1.1
5,504,761 + -0.5
5,504,824 + -0.4
5,504,825 - -1.2
5,504,858 - +2.1
5,504,876 + -1.8
5,504,876 + -1.3
5,504,876 + -0.8
5,504,876 + +1.6
5,504,877 - +0.1
5,504,877 - +0.5
5,504,878 + -0.1
5,504,878 + -0.5
5,504,878 + +0.5
5,504,878 + +0.5
5,504,879 - -1.5
5,504,879 - +1.3
5,504,879 - +0.9
5,504,879 - -1.3
5,504,879 - +0.3
5,504,920 + -0.8
5,504,920 + +0.5
5,504,920 + +0.4
5,504,921 - -0.2
5,504,921 - +1.0
5,505,013 + -0.1
5,505,014 - -1.5
5,505,015 + -0.1
5,505,036 - -0.1
5,505,062 + -0.3
5,505,063 - +1.1
5,505,063 - -1.2
5,505,065 + +0.8
5,505,080 + -1.0
5,506,732 + -0.7
5,506,732 + -1.0
5,506,732 + -0.1
5,506,732 + -1.2
5,506,736 + -0.7
5,506,784 + -1.1
5,506,784 + -1.5

Or see this region's nucleotide sequence