Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4124

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4122 and Echvi_4123 are separated by 73 nucleotidesEchvi_4123 and Echvi_4124 are separated by 27 nucleotidesEchvi_4124 and Echvi_4125 are separated by 34 nucleotides Echvi_4122: Echvi_4122 - Predicted thiol oxidoreductase, at 4,936,289 to 4,937,491 _4122 Echvi_4123: Echvi_4123 - Mn-dependent transcriptional regulator, at 4,937,565 to 4,938,172 _4123 Echvi_4124: Echvi_4124 - Copper chaperone, at 4,938,200 to 4,938,409 _4124 Echvi_4125: Echvi_4125 - copper-(or silver)-translocating P-type ATPase, at 4,938,444 to 4,940,681 _4125 Position (kb) 4938 4939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4937.278 kb on + strand, within Echvi_4122at 4937.278 kb on + strand, within Echvi_4122at 4937.278 kb on + strand, within Echvi_4122at 4937.279 kb on - strand, within Echvi_4122at 4937.279 kb on - strand, within Echvi_4122at 4937.279 kb on - strand, within Echvi_4122at 4937.325 kb on - strand, within Echvi_4122at 4937.359 kb on - strand, within Echvi_4122at 4937.417 kb on + strandat 4937.470 kb on - strandat 4937.491 kb on + strandat 4937.569 kb on + strandat 4937.572 kb on + strandat 4937.742 kb on - strand, within Echvi_4123at 4937.776 kb on + strand, within Echvi_4123at 4937.845 kb on + strand, within Echvi_4123at 4937.846 kb on - strand, within Echvi_4123at 4937.846 kb on - strand, within Echvi_4123at 4937.846 kb on - strand, within Echvi_4123at 4937.849 kb on + strand, within Echvi_4123at 4937.852 kb on + strand, within Echvi_4123at 4937.852 kb on + strand, within Echvi_4123at 4937.853 kb on - strand, within Echvi_4123at 4937.867 kb on - strand, within Echvi_4123at 4937.867 kb on - strand, within Echvi_4123at 4937.948 kb on + strand, within Echvi_4123at 4937.949 kb on - strand, within Echvi_4123at 4937.957 kb on + strand, within Echvi_4123at 4938.025 kb on + strand, within Echvi_4123at 4938.037 kb on - strand, within Echvi_4123at 4938.079 kb on - strand, within Echvi_4123at 4938.079 kb on - strand, within Echvi_4123at 4938.144 kb on - strandat 4938.144 kb on - strandat 4938.194 kb on + strandat 4938.196 kb on + strandat 4938.205 kb on + strandat 4938.206 kb on - strandat 4938.217 kb on + strandat 4938.246 kb on - strand, within Echvi_4124at 4938.308 kb on - strand, within Echvi_4124at 4938.379 kb on + strand, within Echvi_4124at 4938.380 kb on - strand, within Echvi_4124at 4938.404 kb on - strandat 4938.412 kb on + strandat 4938.452 kb on + strandat 4938.473 kb on + strandat 4938.553 kb on + strandat 4938.555 kb on + strandat 4938.555 kb on + strandat 4938.556 kb on - strandat 4938.556 kb on - strandat 4938.572 kb on + strandat 4938.572 kb on + strandat 4938.579 kb on - strandat 4938.582 kb on + strandat 4938.585 kb on + strandat 4938.585 kb on + strandat 4938.585 kb on + strandat 4938.585 kb on + strandat 4938.585 kb on + strandat 4938.586 kb on - strandat 4938.586 kb on - strandat 4938.586 kb on - strandat 4938.586 kb on - strandat 4938.597 kb on - strandat 4938.710 kb on + strand, within Echvi_4125at 4938.710 kb on + strand, within Echvi_4125at 4938.711 kb on - strand, within Echvi_4125at 4938.711 kb on - strand, within Echvi_4125at 4938.714 kb on + strand, within Echvi_4125at 4938.714 kb on + strand, within Echvi_4125at 4938.714 kb on + strand, within Echvi_4125at 4938.714 kb on + strand, within Echvi_4125at 4938.714 kb on + strand, within Echvi_4125at 4938.715 kb on - strand, within Echvi_4125at 4938.715 kb on - strand, within Echvi_4125at 4938.715 kb on - strand, within Echvi_4125at 4938.715 kb on - strand, within Echvi_4125at 4938.715 kb on - strand, within Echvi_4125at 4938.741 kb on - strand, within Echvi_4125at 4938.741 kb on - strand, within Echvi_4125at 4938.741 kb on - strand, within Echvi_4125at 4938.741 kb on - strand, within Echvi_4125at 4938.932 kb on + strand, within Echvi_4125at 4938.932 kb on + strand, within Echvi_4125at 4938.932 kb on + strand, within Echvi_4125at 4938.933 kb on - strand, within Echvi_4125at 4938.934 kb on + strand, within Echvi_4125at 4938.942 kb on + strand, within Echvi_4125at 4938.949 kb on - strand, within Echvi_4125at 4938.990 kb on + strand, within Echvi_4125at 4938.991 kb on - strand, within Echvi_4125at 4938.995 kb on + strand, within Echvi_4125at 4938.995 kb on + strand, within Echvi_4125at 4939.003 kb on - strand, within Echvi_4125at 4939.026 kb on + strand, within Echvi_4125at 4939.026 kb on + strand, within Echvi_4125at 4939.107 kb on + strand, within Echvi_4125at 4939.107 kb on + strand, within Echvi_4125at 4939.108 kb on - strand, within Echvi_4125at 4939.108 kb on - strand, within Echvi_4125at 4939.108 kb on - strand, within Echvi_4125at 4939.136 kb on + strand, within Echvi_4125at 4939.142 kb on + strand, within Echvi_4125at 4939.142 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.144 kb on + strand, within Echvi_4125at 4939.145 kb on - strand, within Echvi_4125at 4939.147 kb on + strand, within Echvi_4125at 4939.148 kb on - strand, within Echvi_4125at 4939.154 kb on + strand, within Echvi_4125at 4939.154 kb on + strand, within Echvi_4125at 4939.155 kb on - strand, within Echvi_4125at 4939.163 kb on + strand, within Echvi_4125at 4939.209 kb on + strand, within Echvi_4125at 4939.210 kb on - strand, within Echvi_4125at 4939.239 kb on + strand, within Echvi_4125at 4939.312 kb on + strand, within Echvi_4125at 4939.340 kb on - strand, within Echvi_4125at 4939.361 kb on + strand, within Echvi_4125at 4939.362 kb on - strand, within Echvi_4125at 4939.392 kb on + strand, within Echvi_4125at 4939.393 kb on - strand, within Echvi_4125at 4939.393 kb on - strand, within Echvi_4125at 4939.393 kb on - strand, within Echvi_4125at 4939.397 kb on + strand, within Echvi_4125at 4939.397 kb on + strand, within Echvi_4125at 4939.398 kb on - strand, within Echvi_4125at 4939.398 kb on - strand, within Echvi_4125at 4939.398 kb on - strand, within Echvi_4125at 4939.398 kb on - strand, within Echvi_4125at 4939.403 kb on + strand, within Echvi_4125

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,937,278 + Echvi_4122 0.82 -1.9
4,937,278 + Echvi_4122 0.82 +2.1
4,937,278 + Echvi_4122 0.82 +1.5
4,937,279 - Echvi_4122 0.82 -0.8
4,937,279 - Echvi_4122 0.82 -0.7
4,937,279 - Echvi_4122 0.82 +0.2
4,937,325 - Echvi_4122 0.86 +0.5
4,937,359 - Echvi_4122 0.89 -0.3
4,937,417 + +0.7
4,937,470 - +0.3
4,937,491 + +0.0
4,937,569 + -0.4
4,937,572 + +0.2
4,937,742 - Echvi_4123 0.29 -1.0
4,937,776 + Echvi_4123 0.35 -0.4
4,937,845 + Echvi_4123 0.46 +0.5
4,937,846 - Echvi_4123 0.46 -2.5
4,937,846 - Echvi_4123 0.46 -1.0
4,937,846 - Echvi_4123 0.46 +1.8
4,937,849 + Echvi_4123 0.47 +0.4
4,937,852 + Echvi_4123 0.47 +0.2
4,937,852 + Echvi_4123 0.47 -0.9
4,937,853 - Echvi_4123 0.47 -2.7
4,937,867 - Echvi_4123 0.50 +0.6
4,937,867 - Echvi_4123 0.50 -1.3
4,937,948 + Echvi_4123 0.63 -1.1
4,937,949 - Echvi_4123 0.63 -0.1
4,937,957 + Echvi_4123 0.64 +0.0
4,938,025 + Echvi_4123 0.76 -0.4
4,938,037 - Echvi_4123 0.78 -0.5
4,938,079 - Echvi_4123 0.85 +0.6
4,938,079 - Echvi_4123 0.85 -0.4
4,938,144 - +1.6
4,938,144 - +1.7
4,938,194 + +0.1
4,938,196 + +0.9
4,938,205 + -0.5
4,938,206 - -0.0
4,938,217 + -0.8
4,938,246 - Echvi_4124 0.22 -1.3
4,938,308 - Echvi_4124 0.51 +1.9
4,938,379 + Echvi_4124 0.85 -1.3
4,938,380 - Echvi_4124 0.86 -1.7
4,938,404 - -0.5
4,938,412 + +0.1
4,938,452 + +0.6
4,938,473 + -1.9
4,938,553 + -0.7
4,938,555 + -0.4
4,938,555 + -1.0
4,938,556 - -0.7
4,938,556 - +1.6
4,938,572 + +0.9
4,938,572 + -0.1
4,938,579 - -0.3
4,938,582 + -0.4
4,938,585 + +1.0
4,938,585 + +0.8
4,938,585 + -0.2
4,938,585 + +0.1
4,938,585 + +0.7
4,938,586 - -0.1
4,938,586 - -0.7
4,938,586 - -0.4
4,938,586 - +2.1
4,938,597 - -0.2
4,938,710 + Echvi_4125 0.12 -0.3
4,938,710 + Echvi_4125 0.12 -0.0
4,938,711 - Echvi_4125 0.12 -1.0
4,938,711 - Echvi_4125 0.12 +0.9
4,938,714 + Echvi_4125 0.12 +0.9
4,938,714 + Echvi_4125 0.12 -0.9
4,938,714 + Echvi_4125 0.12 +0.8
4,938,714 + Echvi_4125 0.12 -0.4
4,938,714 + Echvi_4125 0.12 -1.1
4,938,715 - Echvi_4125 0.12 -0.3
4,938,715 - Echvi_4125 0.12 -1.3
4,938,715 - Echvi_4125 0.12 -2.0
4,938,715 - Echvi_4125 0.12 +0.1
4,938,715 - Echvi_4125 0.12 -0.3
4,938,741 - Echvi_4125 0.13 -1.2
4,938,741 - Echvi_4125 0.13 +2.3
4,938,741 - Echvi_4125 0.13 +0.8
4,938,741 - Echvi_4125 0.13 +1.4
4,938,932 + Echvi_4125 0.22 +0.3
4,938,932 + Echvi_4125 0.22 +0.4
4,938,932 + Echvi_4125 0.22 -0.4
4,938,933 - Echvi_4125 0.22 +0.0
4,938,934 + Echvi_4125 0.22 +0.3
4,938,942 + Echvi_4125 0.22 +0.8
4,938,949 - Echvi_4125 0.23 +0.8
4,938,990 + Echvi_4125 0.24 +1.2
4,938,991 - Echvi_4125 0.24 -0.5
4,938,995 + Echvi_4125 0.25 -0.1
4,938,995 + Echvi_4125 0.25 -0.3
4,939,003 - Echvi_4125 0.25 -0.1
4,939,026 + Echvi_4125 0.26 +0.8
4,939,026 + Echvi_4125 0.26 -0.8
4,939,107 + Echvi_4125 0.30 +0.1
4,939,107 + Echvi_4125 0.30 +0.4
4,939,108 - Echvi_4125 0.30 +1.1
4,939,108 - Echvi_4125 0.30 -0.7
4,939,108 - Echvi_4125 0.30 -1.3
4,939,136 + Echvi_4125 0.31 -0.8
4,939,142 + Echvi_4125 0.31 -1.0
4,939,142 + Echvi_4125 0.31 -0.7
4,939,144 + Echvi_4125 0.31 +1.3
4,939,144 + Echvi_4125 0.31 -3.3
4,939,144 + Echvi_4125 0.31 +1.0
4,939,144 + Echvi_4125 0.31 -0.1
4,939,144 + Echvi_4125 0.31 +1.7
4,939,144 + Echvi_4125 0.31 -0.3
4,939,144 + Echvi_4125 0.31 -0.1
4,939,144 + Echvi_4125 0.31 +1.1
4,939,145 - Echvi_4125 0.31 +0.4
4,939,147 + Echvi_4125 0.31 -0.2
4,939,148 - Echvi_4125 0.31 +1.4
4,939,154 + Echvi_4125 0.32 -0.4
4,939,154 + Echvi_4125 0.32 -0.7
4,939,155 - Echvi_4125 0.32 -1.0
4,939,163 + Echvi_4125 0.32 +0.7
4,939,209 + Echvi_4125 0.34 -1.6
4,939,210 - Echvi_4125 0.34 +0.5
4,939,239 + Echvi_4125 0.36 +0.8
4,939,312 + Echvi_4125 0.39 +1.5
4,939,340 - Echvi_4125 0.40 +0.2
4,939,361 + Echvi_4125 0.41 -1.9
4,939,362 - Echvi_4125 0.41 -0.4
4,939,392 + Echvi_4125 0.42 +0.4
4,939,393 - Echvi_4125 0.42 -0.4
4,939,393 - Echvi_4125 0.42 +0.3
4,939,393 - Echvi_4125 0.42 +0.3
4,939,397 + Echvi_4125 0.43 +0.2
4,939,397 + Echvi_4125 0.43 +1.1
4,939,398 - Echvi_4125 0.43 +0.6
4,939,398 - Echvi_4125 0.43 +0.8
4,939,398 - Echvi_4125 0.43 +0.2
4,939,398 - Echvi_4125 0.43 -0.1
4,939,403 + Echvi_4125 0.43 +0.9

Or see this region's nucleotide sequence